View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_20 (Length: 288)
Name: NF3271_low_20
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 17514985 - 17515253
Alignment:
| Q |
1 |
gaatttgaaaaagtctgacgggttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagtgtgatggctgcaa |
100 |
Q |
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| T |
17514985 |
gaatttgaaaaattttgacaagttaaaggagtttgaaattgatttgggttcctttgtggagtattcgaagattgagtataatcaagtgtaatggttggaa |
17515084 |
T |
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| Q |
101 |
atggagcagaagttgagatagttgcaatacttgaagaacaaggaaggagtgttcttgtgagtaaatttgcattcaattgtccatcattacttgatgttga |
200 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
17515085 |
atggtgcagaagctgagatagttgcaatacttgaagaacaaggaaggggcgttcttttgagtaaattggcattcagttgtccatcattgcttgatgttga |
17515184 |
T |
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| Q |
201 |
tgctgaaagaagcatctttgcagctgctgaagttgtttttgccatttctttggctgctgcaggtaaagg |
269 |
Q |
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| T |
17515185 |
tgttgaaagaagcatctttgcagctgctgaagttgtttttgccatttctttggctgttgcaggtaaagg |
17515253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 17530142 - 17530410
Alignment:
| Q |
1 |
gaatttgaaaaagtctgacgggttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagtgtgatggctgcaa |
100 |
Q |
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||||||| | || ||||| || |||| ||||||||||| |||| |||||||| ||||||||||| | ||||||||||||||||| ||| || | || | |
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| T |
17530142 |
gaatttgcagaactctgagggattaaaggagtttgaaactgatctgggttcctctgtggagtatttggagattgagtataatcaattgtaatagttgaat |
17530241 |
T |
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| Q |
101 |
atggagcagaagttgagatagttgcaatacttgaagaacaaggaaggagtgttcttgtgagtaaatttgcattcaattgtccatcattacttgatgttga |
200 |
Q |
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| T |
17530242 |
atggagcagaagctgagatagttgcaatccttgaagaacaaggaaggagtgttcttgtgagtaaatttgcattcaattgtccatcattgcttgatgttga |
17530341 |
T |
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| Q |
201 |
tgctgaaagaagcatctttgcagctgctgaagttgtttttgccatttctttggctgctgcaggtaaagg |
269 |
Q |
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| T |
17530342 |
tgctgaaagaagcatctttgcagctgctgaagttgtttttgccatttctttggctgctgcaggtaaagg |
17530410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 16856766 - 16857009
Alignment:
| Q |
23 |
ttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagtgtgatggctgcaaatggagcagaagttgagatagt |
122 |
Q |
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|||| ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||| ||| || | || |||||||||||||| ||||||||| |
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| T |
16856766 |
ttaaaggagtttgaaactgatatgggttcctttgtggagtatttggagattgagtataatcaattgtaattgttggaaatggagcagaagctgagatagt |
16856865 |
T |
|
| Q |
123 |
tgcaatacttgaagaacaaggaaggagtgttcttgtgagtaaatttgcattcaattgtccatcattacttgatgttgatgctgaaagaagcatctttgca |
222 |
Q |
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| T |
16856866 |
tgcaatacttgaagaacaaggaagaggtgttcttgtgagtaaatttgcattcaattgtccatcattacttgatgttgatgctgaaagaagcatctttgca |
16856965 |
T |
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| Q |
223 |
gctgctgaagttgtttttgccatttctttggctgctgcaggtaa |
266 |
Q |
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| T |
16856966 |
gctgctgaagttgtttgtaccatttctttggctgctgcaggtaa |
16857009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 37054249 - 37054187
Alignment:
| Q |
99 |
aaatggagcagaagttgagatagttgcaatacttgaagaacaaggaaggagtgttcttgtgag |
161 |
Q |
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| T |
37054249 |
aaatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgag |
37054187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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