View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_21 (Length: 283)
Name: NF3271_low_21
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 107398 - 107677
Alignment:
| Q |
1 |
tcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgc |
100 |
Q |
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| T |
107398 |
tcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgc |
107497 |
T |
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| Q |
101 |
tgatttctgtgccaaattaaacgtatctccctaaacttacaaaatcacacaatttaatcataaagtacataaaaatttgtcaatttattagtccataaca |
200 |
Q |
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| T |
107498 |
tgatttctgtgccaaattaaacgtatctccctaaacttacaaaatcacacaatttaatcataaagtacataaaaatttgtcaat---ttagtccataaca |
107594 |
T |
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| Q |
201 |
tcttcattagcaaggactaaattgtttttgaagttagtgtttcaatcttaaatgtatcttcttcagccaatgcgctagtccat |
283 |
Q |
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| T |
107595 |
tcttcattagcaaggactaaattgtttttgaagttggtgtttcaatcttaaatgtatcttcttcagccaatgcgctagtccat |
107677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 88034 - 88159
Alignment:
| Q |
1 |
tcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgc |
100 |
Q |
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| T |
88034 |
tcaaacgtgttgttttaacttcttctattgctgctgttgcttataatgggaagcctcgaactcctgatgttgttgttgatgagacttggtttacagatgc |
88133 |
T |
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| Q |
101 |
tgatttctgtgccaaattaaacgtat |
126 |
Q |
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| T |
88134 |
tgatttctgtgctaaatcaaatgtat |
88159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 2707095 - 2707190
Alignment:
| Q |
3 |
aaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgat |
98 |
Q |
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| T |
2707095 |
aaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctcaaactctcgatgtagttgtcgatgaaacttggtttactgat |
2707190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 44784828 - 44784703
Alignment:
| Q |
1 |
tcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgc |
100 |
Q |
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| T |
44784828 |
tcaaacgtgttgtcttaacatcttctgtcgctgctgttgcatacaatggaaagcctcgaactcctgatgttgttgttgatgagacttggtttactgatgc |
44784729 |
T |
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| Q |
101 |
tgatttctgtgccaaattaaacgtat |
126 |
Q |
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| T |
44784728 |
tgatttctgtgctaaatcaaacgtat |
44784703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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