View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_3 (Length: 557)

Name: NF3271_low_3
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_3
NF3271_low_3
[»] chr3 (13 HSPs)
chr3 (1-539)||(53493408-53493946)
chr3 (1-181)||(16072569-16072748)
chr3 (404-481)||(16072927-16073004)
chr3 (275-373)||(16072813-16072911)
chr3 (434-500)||(402458-402524)
chr3 (435-502)||(9832672-9832739)
chr3 (439-502)||(18405752-18405815)
chr3 (432-502)||(20170628-20170698)
chr3 (431-493)||(25447158-25447220)
chr3 (453-539)||(31365123-31365208)
chr3 (436-502)||(39980815-39980881)
chr3 (437-502)||(43046751-43046815)
chr3 (437-501)||(26990144-26990208)
[»] chr8 (13 HSPs)
chr8 (434-507)||(38602408-38602481)
chr8 (453-502)||(1058012-1058061)
chr8 (434-502)||(30251370-30251438)
chr8 (426-502)||(43717842-43717918)
chr8 (434-508)||(12496988-12497062)
chr8 (434-504)||(35534529-35534599)
chr8 (454-502)||(32840922-32840970)
chr8 (439-489)||(12010979-12011029)
chr8 (436-502)||(36963272-36963338)
chr8 (430-464)||(43043792-43043826)
chr8 (429-465)||(12224809-12224845)
chr8 (458-502)||(28763454-28763498)
chr8 (454-502)||(35749506-35749554)
[»] chr7 (10 HSPs)
chr7 (439-502)||(18765370-18765433)
chr7 (429-502)||(36517663-36517736)
chr7 (434-502)||(4970708-4970776)
chr7 (434-502)||(18962499-18962567)
chr7 (427-499)||(19302472-19302544)
chr7 (438-502)||(34464141-34464205)
chr7 (437-508)||(35056755-35056826)
chr7 (434-539)||(5947291-5947395)
chr7 (439-499)||(9210910-9210970)
chr7 (444-500)||(43694494-43694550)
[»] chr6 (4 HSPs)
chr6 (437-502)||(10645304-10645369)
chr6 (429-539)||(848039-848147)
chr6 (444-502)||(2455074-2455132)
chr6 (434-491)||(35069528-35069585)
[»] chr2 (11 HSPs)
chr2 (437-502)||(30331837-30331902)
chr2 (435-502)||(26143559-26143624)
chr2 (427-502)||(15305760-15305835)
chr2 (436-502)||(28677577-28677644)
chr2 (433-502)||(27317465-27317534)
chr2 (434-504)||(4607009-4607079)
chr2 (440-502)||(31561664-31561726)
chr2 (436-481)||(18179056-18179101)
chr2 (430-479)||(39659421-39659470)
chr2 (434-539)||(45229561-45229665)
chr2 (434-502)||(42419879-42419947)
[»] chr1 (7 HSPs)
chr1 (437-502)||(50644174-50644239)
chr1 (436-502)||(33204312-33204378)
chr1 (434-502)||(2295182-2295250)
chr1 (440-495)||(15784410-15784465)
chr1 (453-508)||(29904831-29904886)
chr1 (436-502)||(3233933-3233999)
chr1 (429-499)||(36872817-36872887)
[»] chr4 (12 HSPs)
chr4 (434-502)||(21731572-21731640)
chr4 (434-502)||(29388700-29388768)
chr4 (436-508)||(8705021-8705093)
chr4 (438-498)||(15173223-15173283)
chr4 (434-502)||(54426129-54426197)
chr4 (436-539)||(13126494-13126596)
chr4 (436-499)||(27043748-27043811)
chr4 (443-502)||(40174643-40174702)
chr4 (434-501)||(53294030-53294097)
chr4 (436-502)||(49940085-49940151)
chr4 (434-539)||(25904139-25904243)
chr4 (434-499)||(39691065-39691130)
[»] chr5 (9 HSPs)
chr5 (437-502)||(34736446-34736511)
chr5 (434-502)||(15246919-15246987)
chr5 (438-501)||(9107177-9107240)
chr5 (434-539)||(6521127-6521232)
chr5 (453-502)||(12425659-12425708)
chr5 (453-502)||(15015929-15015978)
chr5 (437-502)||(39594893-39594958)
chr5 (434-495)||(40426858-40426919)
chr5 (436-508)||(3932594-3932666)


Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 53493408 - 53493946
Alignment:
Q  1 atagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493408 atagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatac 53493507  T
Q  101 ttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactctccattc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53493508 ttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactgtccattc 53493607  T
Q  201 aaaaattaagtgtagtgattgttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaac 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493608 acaaattaagtgtagtgattgttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaac 53493707  T
Q  301 gacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattgattgtaacaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493708 gacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattgattgtaacaa 53493807  T
Q  401 aagcaaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53493808 aagcaaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagattgtttgggagaac 53493907  T
Q  501 ttgtaaaaccccactaatgacatttttcataagcttttt 539  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53493908 ttgtaaaaccccactaatgacatttttcataagcttttt 53493946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16072569 - 16072748
Alignment:
Q  1 atagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtatt--aagtctgactatctat 98  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||   |||| || | |||||||    ||||||||||||||    
T  16072569 atagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattgag---aatagtagaggtgtatttgttgtctgactatctat 16072665  T
Q  99 acttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaat 181  Q
    |||||||||||||| ||||| | | ||||| ||||| ||| ||||||||||||| || ||||||||  ||||||| |||||||    
T  16072666 acttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaattcttgtggttggaaagacaaat 16072748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 16072927 - 16073004
Alignment:
Q  404 caaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttg 481  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  16072927 caaaagggatatgtacattgcacacttaggacctgtttggattgacttatttgagcttatctaatgacataagttttg 16073004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 16072813 - 16072911
Alignment:
Q  275 atggatataatttatgtacatcaaacgacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttg 373  Q
    ||||||||||| ||   ||| ||||||||  ||||||||||||||||||||||| |  | |||  ||||||||||| ||||||||||||||||| ||||    
T  16072813 atggatataatctaaccacaacaaacgacggtatgctatgacatggtagtgcacgttattttccttaaaagtaattgatcttgcatggtgagaagtttg 16072911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 402458 - 402524
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 500  Q
    |||||||||| ||||  | |||||| ||||| | | |||||||||||||||||||||||||||||||    
T  402458 gcctgtttgggttgacctatttgagtttatcaactaacataagttttgcaagactgtttgggagaac 402524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 9832672 - 9832739
Alignment:
Q  435 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||| |||||| || ||||||||||| || | ||||||||||||  | |||||||||||||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaactt 9832739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 502
Target Start/End: Original strand, 18405752 - 18405815
Alignment:
Q  439 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  ||||||||||  |||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaactt 18405815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 20170628 - 20170698
Alignment:
Q  432 gagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||||||  || |||||||||||||| | |||||||||| |  ||||||||||  |||||||    
T  20170628 gagcctgtttggattggcttatttgagcttatctagtgacataagtttagtgagactgtttgttagaactt 20170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 493
Target Start/End: Original strand, 25447158 - 25447220
Alignment:
Q  431 agagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttg 493  Q
    |||| ||||||||||||| || |||||| ||||||| | ||||||||||||  ||||||||||    
T  25447158 agagtctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 539
Target Start/End: Original strand, 31365123 - 31365208
Alignment:
Q  453 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagcttttt 539  Q
    |||||||||||||| |  |||||||||||  ||||||||||||||||||| | |||  |  || |||||| ||||||||||||||||    
T  31365123 tttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaa-gcagcttatgacaattttcataagcttttt 31365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 39980881 - 39980815
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||||  |||||||||  ||||||||    
T  39980881 ctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaactt 39980815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 43046815 - 43046751
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||| |||||| || ||||| |||||||| ||||||| ||||||  |||||||||||||||||||    
T  43046815 tgtttagattgacttatttgaacttatcta-ttacatatgttttgtgagactgtttgggagaactt 43046751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 26990144 - 26990208
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 501  Q
    |||||||||||| || |||||||||||||| | ||||| | ||||| | | ||||||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacataggctttgcgatattgtttgggagaact 26990208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 507
Target Start/End: Complemental strand, 38602481 - 38602408
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaa 507  Q
    ||||||||||||||| || |||||||||||||| | ||||||||||||  || |||||||||||||||| ||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaacttataaa 38602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 1058012 - 1058061
Alignment:
Q  453 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  1058012 tttgagcttatctacttacataagttttgtgagactgtttgggagaactt 1058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 30251370 - 30251438
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||||  || |||||||||||||| | |||||||||| |  |||||||||||||||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaactt 30251438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 502
Target Start/End: Original strand, 43717842 - 43717918
Alignment:
Q  426 cacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||| |||| |||||||||  || |||||||||||||| | ||||||||||||  ||||| |||||||||||||    
T  43717842 cacttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaactt 43717918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 12496988 - 12497062
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 508  Q
    |||| ||||||||||||| |||||||||||||  |  |||||||||||  |||||||||| |||||||| |||||    
T  12496988 gcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaa 12497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 35534529 - 35534599
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 504  Q
    |||||||| || ||| || |||||||||||||| | ||||||||||||  |||||||||| ||||||||||    
T  35534529 gcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgt 35534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 32840922 - 32840970
Alignment:
Q  454 ttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||| | ||| ||||||||| |||||||||||||||||||    
T  32840922 ttgagcttatctactcacacaagttttgcgagactgtttgggagaactt 32840970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 12011029 - 12010979
Alignment:
Q  439 tttggattgatttgtttgagcttatctaattacataagttttgcaagactg 489  Q
    |||||||||| || |||||||||||||||||||||| ||||| | ||||||    
T  12011029 tttggattgacttatttgagcttatctaattacatatgttttacgagactg 12010979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 36963272 - 36963338
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||  || |||||||| ||||| |  |||||||||||  |||||||||||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaactt 36963338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 464
Target Start/End: Complemental strand, 43043826 - 43043792
Alignment:
Q  430 tagagcctgtttggattgatttgtttgagcttatc 464  Q
    ||||||||||||||||||| |||||||||||||||    
T  43043826 tagagcctgtttggattgacttgtttgagcttatc 43043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 12224809 - 12224845
Alignment:
Q  429 ttagagcctgtttggattgatttgtttgagcttatct 465  Q
    |||||||||||||||||||| || |||||||||||||    
T  12224809 ttagagcctgtttggattgaattatttgagcttatct 12224845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 28763498 - 28763454
Alignment:
Q  458 gcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| | ||||||||||||  |||||||||||||||||||    
T  28763498 gcttatctagtaacataagttttgtgagactgtttgggagaactt 28763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 35749506 - 35749554
Alignment:
Q  454 ttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||| | ||||||||||||| || ||||||| ||||||||    
T  35749506 ttgagcttatctattgacataagttttgcgaggctgtttgagagaactt 35749554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 18765433 - 18765370
Alignment:
Q  439 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaactt 18765370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 36517736 - 36517663
Alignment:
Q  429 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||| ||||||||||||| |||| |||||||||| ||| |  ||||||||||  ||||||||||||||||||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaactt 36517663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 4970708 - 4970776
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||||| || |||||||||||||  | |||||||| |||  |||||||||||||||||||    
T  4970708 gcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaactt 4970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 18962499 - 18962567
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||||| || || || |||||||| | ||||||||||||  ||||||||| |||||||||    
T  18962499 gcctgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaactt 18962567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 499
Target Start/End: Original strand, 19302472 - 19302544
Alignment:
Q  427 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 499  Q
    ||||||| |||||||| ||||| || |||||||||||||| | ||||||||||||  ||| | ||||||||||    
T  19302472 acttagaacctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaa 19302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 502
Target Start/End: Original strand, 34464141 - 34464205
Alignment:
Q  438 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||| |||||| ||||||| | |||||| |||| ||||||| |||||||| ||||    
T  34464141 gtttggattgatttatttgagtttatctattgacataaattttacaagactttttgggaggactt 34464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 508
Target Start/End: Complemental strand, 35056826 - 35056755
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 508  Q
    |||||||||||| || | |||||||||||| | ||||| |||| | || ||||||||||||||||| |||||    
T  35056826 tgtttggattgagttttctgagcttatctactaacatacgtttagtaaaactgtttgggagaacttataaaa 35056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 5947395 - 5947291
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 533  Q
    ||||||||||||||  || |||||||||||||| |   |||||||||   ||||||||||| ||||||| | ||| ||  || ||||||||||||||| |    
T  5947395 gcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaa-ccagcttatgacatttttcatatg 5947297  T
Q  534 cttttt 539  Q
    ||||||    
T  5947296 cttttt 5947291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 9210970 - 9210910
Alignment:
Q  439 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 499  Q
    |||||||||| || |||||||||||||| | | |||||||||   ||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaa 9210910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 43694494 - 43694550
Alignment:
Q  444 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 500  Q
    |||||||| |||||| ||||||| | | ||||||||| | |||||||||||||||||    
T  43694494 attgatttatttgagtttatctactaatataagttttacgagactgtttgggagaac 43694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 502
Target Start/End: Original strand, 10645304 - 10645369
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||  |  |||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  10645304 tgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaactt 10645369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 539
Target Start/End: Complemental strand, 848147 - 848039
Alignment:
Q  429 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttc 528  Q
    |||| ||||||||||||||  || |||||||||||||| |  |||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||||||    
T  848147 ttagggcctgtttggattgccttatttgagcttatcta-tagcataagttttgtgagactgtttggaagaacttataaaa-actgcttatgacatttttc 848050  T
Q  529 ataagcttttt 539  Q
     ||||||||||    
T  848049 ttaagcttttt 848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 2455132 - 2455074
Alignment:
Q  444 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||| ||| ||||| |||||||| | ||||||||||||  |||||||||||||||||||    
T  2455132 attggtttatttgaacttatctactaacataagttttgtgagactgtttgggagaactt 2455074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 35069528 - 35069585
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtt 491  Q
    ||||||||| ||||  || |||||||||||||| | |||||||||||| |||||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataagttttgtaagactgtt 35069585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 30331902 - 30331837
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||| || ||| |||||||||| | ||||||||||||  |||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaactt 30331837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 26143559 - 26143624
Alignment:
Q  435 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||  ||||||||||||||||| | |||||| |||||  |||||||||||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataaattttg--agactgtttgggagaactt 26143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 15305835 - 15305760
Alignment:
Q  427 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||| ||||||||||||||  || |||||||||||||| | ||||||||||||  | ||||||||| |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaactt 15305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 28677577 - 28677644
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgc-aagactgtttgggagaactt 502  Q
    |||||||||||||||| ||||||||||| || || |||||||  ||| ||||||||||||||||||||    
T  28677577 ctgtttggattgatttttttgagcttatttacttgcataagtactgctaagactgtttgggagaactt 28677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 27317534 - 27317465
Alignment:
Q  433 agcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||||| || ||||||||||||||   |||||||||||   |||||||||| ||||||||    
T  27317534 agcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaactt 27317465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 4607079 - 4607009
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 504  Q
    ||||||||||||||  || ||||||||||||||   | ||||||||||  ||||| |||||||||||||||    
T  4607079 gcctgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgt 4607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 31561664 - 31561726
Alignment:
Q  440 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| || |||||| ||||||| | |||||||||||| || ||||||||||| |||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaactgtttgggaaaactt 31561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 18179101 - 18179056
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttg 481  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||    
T  18179101 ctgtttggattgacttatttgagcttatctactaacataagttttg 18179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 39659421 - 39659470
Alignment:
Q  430 tagagcctgtttggattgatttgtttgagcttatctaattacataagttt 479  Q
    ||||||||||||||||||  ||| ||||||||||||| | ||||||||||    
T  39659421 tagagcctgtttggattggcttgcttgagcttatctactgacataagttt 39659470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 45229665 - 45229561
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 533  Q
    |||||||||||||| ||  |||||||||||||| |  |||||||| ||| | || |||||||||||||| | |||   | || |||||||||||||| ||    
T  45229665 gcctgtttggattggttgatttgagcttatctactggcataagttatgccacaccgtttgggagaacttatgaaaagac-cttatgacatttttcattag 45229567  T
Q  534 cttttt 539  Q
    ||||||    
T  45229566 cttttt 45229561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 42419947 - 42419879
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||| |||||||||| || |||||| ||||||  | |||||||||||   |||||||||||||||||||    
T  42419947 gcctttttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaactt 42419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 502
Target Start/End: Original strand, 50644174 - 50644239
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||  |||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaactt 50644239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 33204312 - 33204378
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||| ||| || || |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  33204312 ctgtttagatcgacttatttgagcttatctactgacataagttttgtgagactgtttgggagaactt 33204378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 2295250 - 2295182
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| ||||  || |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaactt 2295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 15784465 - 15784410
Alignment:
Q  440 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 495  Q
    |||||| || || |||||||||||||| | |||||||||||| |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgtaagactgtttggg 15784410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 508
Target Start/End: Complemental strand, 29904886 - 29904831
Alignment:
Q  453 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 508  Q
    |||||||||||||| || |||||||||||  |||||||||| |||||||| |||||    
T  29904886 tttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaa 29904831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 3233933 - 3233999
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||| || |||||||||||||| |  | |||||||||  |||||||| ||||||||||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaactt 3233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 36872887 - 36872817
Alignment:
Q  429 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 499  Q
    |||| ||||||||||||||  || ||| |||||| ||||  ||||||||||||| ||||||||| ||||||    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaa 36872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 21731572 - 21731640
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||| ||| ||||||| |||||| | ||||||||||||  ||| |||||||||||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaactt 21731640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 29388768 - 29388700
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||| |||| || ||||| |||||||| | |||||||||||| |||| |||||||||||||||    
T  29388768 gcctgtttgggttgacttatttgaccttatctactaacataagttttgtaagattgtttgggagaactt 29388700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 508
Target Start/End: Complemental strand, 8705093 - 8705021
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 508  Q
    ||||||||||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||||| |||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaa 8705021  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 15173223 - 15173283
Alignment:
Q  438 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggaga 498  Q
    ||||||||||| || ||||| |||||||| | ||||||||||||  |||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggaga 15173283  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 54426197 - 54426129
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||||  || |||||||||||||| |  |||||||||||  |||||| ||||||||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaactt 54426129  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 539
Target Start/End: Original strand, 13126494 - 13126596
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagct 535  Q
    ||||||||||||  || ||| |||||| ||| | ||||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||| |||||||||    
T  13126494 ctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaa-acagcttatgacatttatcataagct 13126592  T
Q  536 tttt 539  Q
    ||||    
T  13126593 tttt 13126596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 499
Target Start/End: Original strand, 27043748 - 27043811
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 499  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||  | ||||||||| ||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaa 27043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 40174702 - 40174643
Alignment:
Q  443 gattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||| |||||| ||||||| | ||||||||||||  ||||||||||||| |||||    
T  40174702 gattgatttatttgagtttatctactaacataagttttgtgagactgtttgggataactt 40174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 501
Target Start/End: Original strand, 53294030 - 53294097
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 501  Q
    ||||||||||||||| |  |||| ||||||||| | |||| ||||||| |||||||||||||| ||||    
T  53294030 gcctgtttggattgactaatttgtgcttatctactgacatgagttttgtaagactgtttgggaaaact 53294097  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 49940085 - 49940151
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    ||||||||||||| || |||||||||| ||  | ||||||||||||  |||||||||| ||||||||    
T  49940085 ctgtttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaactt 49940151  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 539
Target Start/End: Original strand, 25904139 - 25904243
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 533  Q
    |||||||| | |||| || |||||||||||| ||| |||||| |||||  ||||||||||||||| ||| | |||  |  || ||| |||||||||||||    
T  25904139 gcctgttttggttgacttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaa-acagcttatgccatttttcataag 25904237  T
Q  534 cttttt 539  Q
    ||||||    
T  25904238 cttttt 25904243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 499
Target Start/End: Original strand, 39691065 - 39691130
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 499  Q
    ||||||||| ||||| || |||||||||||||| |  |||||||||||  |||||||||| |||||    
T  39691065 gcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaa 39691130  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 502
Target Start/End: Original strand, 34736446 - 34736511
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||| || |||||||||||||  | ||||||||||||  |||| ||||||||||||||    
T  34736446 tgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttgggagaactt 34736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 15246987 - 15246919
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||  ||| |||||||||||||| | |||||||||||   ||| |||||||||||||||    
T  15246987 gcctgtttggatttgtttatttgagcttatctactgacataagttttattagaatgtttgggagaactt 15246919  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 9107240 - 9107177
Alignment:
Q  438 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 501  Q
    ||||||||||| || |||||| ||||||| | ||||||||||||  ||| ||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaact 9107177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 6521232 - 6521127
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 533  Q
    ||||||||||||||| || || ||||| | ||| | ||||| ||||||  ||| ||||||||||||||| | ||| |  ||| |||||| |||||| |||    
T  6521232 gcctgtttggattgacttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaacggacttatgacaattttcacaag 6521133  T
Q  534 cttttt 539  Q
    ||||||    
T  6521132 cttttt 6521127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 12425708 - 12425659
Alignment:
Q  453 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  12425708 tttgagcttatctactgtcataagttttgtgagactgtttgggagaactt 12425659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 15015978 - 15015929
Alignment:
Q  453 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||||| | ||||||| ||||  |||||||||||||||||||    
T  15015978 tttgagcttatctactgacataagctttgtgagactgtttgggagaactt 15015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 39594958 - 39594893
Alignment:
Q  437 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 502  Q
    |||||||||||| || ||||||||||||||   ||||||||||||  ||| ||||||||| |||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgttagattgtttgggacaactt 39594893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 40426919 - 40426858
Alignment:
Q  434 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 495  Q
    |||||||| | |||| || |||||||||||||||| |||||| |||||  ||||||||||||    
T  40426919 gcctgttttggttgacttatttgagcttatctaatgacataaattttgtgagactgtttggg 40426858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 3932594 - 3932666
Alignment:
Q  436 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 508  Q
    ||||||||||||| |  |||||||||||||||  ||||||| ||||  |||||||||| || |||||| ||||    
T  3932594 ctgtttggattgactaatttgagcttatctaacaacataagctttgtgagactgtttgagaaaacttgcaaaa 3932666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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