View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_31 (Length: 245)
Name: NF3271_low_31
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_31 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1762318 - 1762080
Alignment:
| Q |
1 |
aacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaacatacctaaagcctggaattccagca |
100 |
Q |
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| T |
1762318 |
aacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaacatacctaaagcctggaattccagca |
1762219 |
T |
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| Q |
101 |
aaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcac |
200 |
Q |
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| T |
1762218 |
aaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcac |
1762119 |
T |
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| Q |
201 |
ctgataagtttctcaagtcttggtcaactttaatctctg |
239 |
Q |
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| T |
1762118 |
ctgataagtttctcaagtcttggtcaactttaatctctg |
1762080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 25196765 - 25196654
Alignment:
| Q |
128 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
227 |
Q |
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| T |
25196765 |
tctctaagctttgcgaatatttcttttccttcaacataattgctcccaaaacacactctagcaattatgtcagccgacaagcttcgcaaatcttcatcaa |
25196666 |
T |
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| Q |
228 |
ctttaatctctg |
239 |
Q |
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| T |
25196665 |
ctgtaatctctg |
25196654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 19207257 - 19207093
Alignment:
| Q |
75 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
174 |
Q |
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| T |
19207257 |
catacctaaagcccggaattccaacatatatcttggagaggagttttataagatctctaagctttgtgaatatttcttttccttcgacataattgctccc |
19207158 |
T |
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| Q |
175 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctg |
239 |
Q |
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||||| | |||| |||||||||||| |||| ||| ||| || |||| |||||||||||||||| |
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| T |
19207157 |
aaaactaactctagcaattatgtcagctgacaagcttcgcagatcttcatcaactttaatctctg |
19207093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 9527 - 9419
Alignment:
| Q |
131 |
ctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactt |
230 |
Q |
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|||||||||| || |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||| ||| || |||| ||||| || |
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| T |
9527 |
ctaagctttgtgaatatttcttttcctttgacataattgctcccaaaacaaactctagcaattatgtcagctgacaagcttcgcagatcttcgtcaattt |
9428 |
T |
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| Q |
231 |
taatctctg |
239 |
Q |
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| ||||||| |
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| T |
9427 |
ttatctctg |
9419 |
T |
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