View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_37 (Length: 237)

Name: NF3271_low_37
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_37
NF3271_low_37
[»] chr4 (6 HSPs)
chr4 (18-237)||(56337073-56337291)
chr4 (18-230)||(36182892-36183104)
chr4 (18-77)||(9690930-9690989)
chr4 (18-65)||(41382493-41382540)
chr4 (34-77)||(52617454-52617497)
chr4 (23-79)||(2072046-2072102)
[»] chr3 (7 HSPs)
chr3 (18-237)||(46189840-46190059)
chr3 (18-74)||(2426853-2426909)
chr3 (26-86)||(14307707-14307767)
chr3 (29-77)||(18381567-18381615)
chr3 (23-74)||(17271260-17271311)
chr3 (23-77)||(30802662-30802716)
chr3 (157-221)||(2426992-2427056)
[»] chr8 (4 HSPs)
chr8 (18-237)||(12340915-12341134)
chr8 (18-213)||(37165694-37165889)
chr8 (18-77)||(25193596-25193655)
chr8 (18-77)||(29721483-29721542)
[»] chr7 (4 HSPs)
chr7 (18-191)||(23887478-23887651)
chr7 (18-191)||(23898654-23898827)
chr7 (23-79)||(8752967-8753023)
chr7 (26-86)||(33821100-33821160)
[»] chr1 (5 HSPs)
chr1 (18-86)||(38070331-38070399)
chr1 (29-77)||(19014567-19014615)
chr1 (18-77)||(40563131-40563190)
chr1 (30-73)||(52691983-52692026)
chr1 (18-86)||(28358389-28358457)
[»] chr2 (2 HSPs)
chr2 (18-77)||(33583924-33583983)
chr2 (18-79)||(7301179-7301240)
[»] chr6 (7 HSPs)
chr6 (23-77)||(26514232-26514286)
chr6 (29-77)||(28576043-28576091)
chr6 (180-230)||(8384369-8384419)
chr6 (18-77)||(32186191-32186250)
chr6 (18-60)||(2923396-2923438)
chr6 (36-77)||(13563528-13563569)
chr6 (18-86)||(19350443-19350511)
[»] chr5 (3 HSPs)
chr5 (18-77)||(34338392-34338451)
chr5 (167-232)||(35637500-35637565)
chr5 (24-77)||(22176405-22176458)
[»] scaffold0048 (1 HSPs)
scaffold0048 (23-77)||(63870-63924)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 56337073 - 56337291
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagggagtgatgggggagggtggttcactgacagg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  56337073 gttggaggttgggggtcggagtgtttctacttggtggagggagatagcgaagattagggacggagtagggagtgatgggggagggtggttcgctgacagg 56337172  T
Q  118 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgact 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  56337173 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttagacgatgttcc-ttgtgtcggcggtttagtcgcttatttgact 56337271  T
Q  218 tatcgttgaataagttgatt 237  Q
     |||||||||||||||||||    
T  56337272 catcgttgaataagttgatt 56337291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 36183104 - 36182892
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagggagtgatgggggagggtggttcactgacagg 117  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||   |||||| ||||||  ||| |      
T  36183104 gttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagattagggacggagtagagagtgacatgggaggctggttcgttgataat 36183005  T
Q  118 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgact 217  Q
    || | ||| ||||| |||   || ||||||| ||  || ||||||||  |||||||||||||||| || |||||| |||||||| ||   |||||| | |    
T  36183004 gtatttagaaaggtggggagcggttcaaatagattgttttggcatgacaggtggttaggcgatgtcccgttgtgtaggcggttttgtcatttatttaatt 36182905  T
Q  218 tatcgttgaataa 230  Q
    || ||||||||||    
T  36182904 tagcgttgaataa 36182892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 9690989 - 9690930
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||||||||| ||||||||||||  |||||||||||||||||| |||||||||||    
T  9690989 gttggaggttgggggccggagtgtttctcattggtggagggagatagcgaagattaggga 9690930  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 41382540 - 41382493
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagc 65  Q
    |||| |||||||||| ||||||||||||||||||||||| ||| ||||    
T  41382540 gttggaggttgggggccggagtgtttctacttggtggagagagttagc 41382493  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 52617454 - 52617497
Alignment:
Q  34 cggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||||||||||  ||||||||||||||||||| |||||||||||    
T  52617454 cggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 2072102 - 2072046
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacg 79  Q
    |||||||||| ||||||||||||   |||||||||||| |||  |||||||||||||    
T  2072102 aggttgggggacggagtgtttcttgctggtggagggagttagtgaagattagggacg 2072046  T

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Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 46190059 - 46189840
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagggagtgatgggggagggtggttcactgacagg 117  Q
    |||| |||||||||| ||||||||||||| ||| ||||||||| |||| ||||||||||||  |||||||||||||| |||||| |||||| ||||||||    
T  46190059 gttggaggttgggggccggagtgtttctaattgatggagggaggtagcgaagattagggactgagtagggagtgatgagggaggttggttcgctgacagg 46189960  T
Q  118 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgact 217  Q
    |||||||||||||||| ||||||||||||||| | | ||||||||||| |||||||||||||||| ||| |||||||| |||||||| ||| ||||||||    
T  46189959 gtgtctaggaaggtagaggaaggatcaaataccttactctggcatgataggtggttaggcgatgtccctatgtgtcggtggtttagtcgctcatttgact 46189860  T
Q  218 tatcgttgaataagttgatt 237  Q
    ||||||||||||||||||||    
T  46189859 tatcgttgaataagttgatt 46189840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 2426853 - 2426909
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattag 74  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  2426853 gttggaggttgggggtcggagtgtttctacttggtggagagagttagcgaagattag 2426909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 14307767 - 14307707
Alignment:
Q  26 ttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagg 86  Q
    ||||||| |||||||| ||  ||||||||||||||||||| ||||||||||| | ||||||    
T  14307767 ttgggggccggagtgtgtcaccttggtggagggagatagcgaagattagggatggagtagg 14307707  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 18381615 - 18381567
Alignment:
Q  29 ggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| ||||||||||||| |||||||||||||||||| | |||||||||    
T  18381615 gggggcggagtgtttctatttggtggagggagatagcgaggattaggga 18381567  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 17271260 - 17271311
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattag 74  Q
    |||||||||||  |||||||||| |||||||||||||||| ||||| |||||    
T  17271260 aggttgggggtaagagtgtttcttcttggtggagggagatcgcaaaaattag 17271311  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 30802662 - 30802716
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    ||||||||||||||| ||||||| |||||| | ||||||| ||||| ||||||||    
T  30802662 aggttgggggtcggaatgtttcttcttggtagcgggagattgcaaaaattaggga 30802716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 2426992 - 2427056
Alignment:
Q  157 tggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgacttatc 221  Q
    ||||| ||| |||||||||| ||||||||||||||| |||| ||| || |||| ||||| |||||    
T  2426992 tggcaggataggtggttaggagatgttcctttgtgtaggcgttttggtcgcttgtttgatttatc 2427056  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 12341134 - 12340915
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagggagtgatgggggagggtggttcactgacagg 117  Q
    |||| |||||||| | ||||||||||||| |||||||||| ||||||| ||||||||||| |   ||  |||||| | |||||| |||||  | |||||     
T  12341134 gttggaggttgggagccggagtgtttctaattggtggaggtagatagcgaagattagggatggtttacagagtgaggtgggaggatggtttgcagacagt 12341035  T
Q  118 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgact 217  Q
    |||| ||||||||| ||| | || |||||||||| ||| ||||||||| |||||||||| ||||| || ||||||| | |||||||| | |||||||| |    
T  12341034 gtgtataggaaggtggggaacggttcaaatacattattttggcatgataggtggttaggtgatgtcccgttgtgtcagtggtttagtcgtttatttgatt 12340935  T
Q  218 tatcgttgaataagttgatt 237  Q
    ||||||||||||| ||||||    
T  12340934 tatcgttgaataaattgatt 12340915  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 37165694 - 37165889
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagggagtgatgggggagggtggttcactgacagg 117  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| || |||  ||||||| ||||||| ||| |      
T  37165694 gttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagattagggacggagtagagattgagaggggaggctggttcattgataat 37165793  T
Q  118 gtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtgtcggcggtttagttgcttattt 213  Q
    || | ||| ||||| |||   || ||||||||||  || ||||||||  ||||| ||||||||||||| |||||| ||||||||||| | ||||||    
T  37165794 gtatttagaaaggtggggagcggttcaaatacattgttttggcatgacaggtggataggcgatgttccgttgtgtaggcggtttagtcgtttattt 37165889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 25193655 - 25193596
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||| ||||| ||||||| ||||  |||||||||||||||||| |||||||||||    
T  25193655 gttggaggtagggggccggagtgattcttattggtggagggagatagcgaagattaggga 25193596  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 29721483 - 29721542
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||| ||||| |||||||| |||  |||||||||||||||||| |||||||||||    
T  29721483 gttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagattaggga 29721542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 23887651 - 23887478
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtag--ggagt-gatgggggagggtggttcactgac 114  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |   |||  | ||| |||||||||   ||||| || ||     
T  23887651 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatgggttaggagaagtagatggggga---tggtttacagat 23887555  T
Q  115 agggtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtg 191  Q
    |||||||| || | ||||||||| ||||||||||| | ||| ||||||||  |||||||||| || |||||||||||    
T  23887554 agggtgtcgagaagggtaggggatggatcaaatactttattttggcatgacaggtggttaggagaggttcctttgtg 23887478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 23898827 - 23898654
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtag--ggagt-gatgggggagggtggttcactgac 114  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |   |||  | ||| |||||||||   ||||| || ||     
T  23898827 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatgggttaggagaagtagatggggga---tggtttacagat 23898731  T
Q  115 agggtgtctaggaaggtaggggaaggatcaaatacatcattctggcatgattggtggttaggcgatgttcctttgtg 191  Q
    |||||||| || | ||||||||| ||||||||||| | ||| ||||||||  |||||||||| || |||||||||||    
T  23898730 agggtgtcgagaagggtaggggatggatcaaatactttattttggcatgacaggtggttaggagaggttcctttgtg 23898654  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 8752967 - 8753023
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacg 79  Q
    |||||||||| |||||||| |||  ||||||||||||||| || |||||||||||||    
T  8752967 aggttgggggccggagtgtctcttgttggtggagggagattgcgaagattagggacg 8753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 33821100 - 33821160
Alignment:
Q  26 ttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagg 86  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| ||||||||||| || |||||    
T  33821100 ttgggggtcggagagtttcttcttggtggatggaaatagcgaagattagggatgaggtagg 33821160  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 38070399 - 38070331
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagg 86  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  38070399 gttggaggttgggggtcggagtgtttctacttggtggagagagttagcgaagattagggacgatgtagg 38070331  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 19014567 - 19014615
Alignment:
Q  29 ggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||||||||||| ||||||||||||||||||  |||||||||||    
T  19014567 ggggccggagtgtttcttcttggtggagggagatagtgaagattaggga 19014615  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 40563131 - 40563190
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||||||||| |||| ||||||  |||||||||| |||||||| |||||||||||    
T  40563131 gttggaggttgggggccggactgtttcatcttggtggagagagatagcgaagattaggga 40563190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 52692026 - 52691983
Alignment:
Q  30 gggtcggagtgtttctacttggtggagggagatagcaaagatta 73  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  52692026 gggtcggagtgattcttcttggtggagggagatagcgaagatta 52691983  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28358457 - 28358389
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagg 86  Q
    |||| |||||||||| |||||||| ||  |||||||||||||  |||| ||||||||||| | ||||||    
T  28358457 gttggaggttgggggccggagtgtctcatcttggtggagggaagtagcgaagattagggatgtagtagg 28358389  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 33583924 - 33583983
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  33583924 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattaggga 33583983  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 7301240 - 7301179
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacg 79  Q
    |||| |||||||||| |  ||||| ||| ||||||||||||||||||| |||||||||||||    
T  7301240 gttggaggttgggggacatagtgtctcttcttggtggagggagatagcgaagattagggacg 7301179  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 26514286 - 26514232
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||    
T  26514286 aggttgggggccggagtggttctatttggtggagggagatagcgaagattaggga 26514232  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 28576043 - 28576091
Alignment:
Q  29 ggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  28576043 ggggacggagtgtttctacttggtggagggaggtagcgaagattaggga 28576091  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 8384369 - 8384419
Alignment:
Q  180 tgttcctttgtgtcggcggtttagttgcttatttgacttatcgttgaataa 230  Q
    |||||| |||||| ||||||||||| |||||||||| ||||||||||||||    
T  8384369 tgttccgttgtgtaggcggtttagtcgcttatttgatttatcgttgaataa 8384419  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 32186250 - 32186191
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||||||||| ||||||| |||| |||||||||||||| |||  |||||||||||    
T  32186250 gttggaggttgggggccggagtgcttcttcttggtggagggaggtagtgaagattaggga 32186191  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2923438 - 2923396
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggag 60  Q
    |||| |||||||||| |||||||||||| ||||||||||||||    
T  2923438 gttggaggttgggggacggagtgtttcttcttggtggagggag 2923396  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13563528 - 13563569
Alignment:
Q  36 gagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  13563528 gagtgtttctatttggtggagggaggtagcgaagattaggga 13563569  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 19350511 - 19350443
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattagggacgaagtagg 86  Q
    |||| |||||||||| |||||||| ||  ||||||||| |||| |||| ||||||||||| | ||||||    
T  19350511 gttggaggttgggggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatggagtagg 19350443  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 34338451 - 34338392
Alignment:
Q  18 gttgcaggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    |||| |||||||||| |||||||||||| |||||||||||| |||||| |||| ||||||    
T  34338451 gttggaggttgggggccggagtgtttcttcttggtggagggggatagcgaagactaggga 34338392  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 35637565 - 35637500
Alignment:
Q  167 ggtggttaggcgatgttcctttgtgtcggcggtttagttgcttatttgacttatcgttgaataagt 232  Q
    |||||||||| || |||||||| ||| || ||||||||||||||||||| ||| || |||||||||    
T  35637565 ggtggttaggtgaggttcctttttgtaggaggtttagttgcttatttgatttagcggtgaataagt 35637500  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 22176405 - 22176458
Alignment:
Q  24 ggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    ||||||||| |||||||| ||| ||||||||| ||| ||||| |||||||||||    
T  22176405 ggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattaggga 22176458  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 63870 - 63924
Alignment:
Q  23 aggttgggggtcggagtgtttctacttggtggagggagatagcaaagattaggga 77  Q
    ||||||||||   |||||||||||||||||||||||||||||| |||||| ||||    
T  63870 aggttgggggctagagtgtttctacttggtggagggagatagcgaagattcggga 63924  T

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