View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_4 (Length: 450)

Name: NF3271_low_4
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_4
NF3271_low_4
[»] chr4 (6 HSPs)
chr4 (13-450)||(56337275-56337722)
chr4 (117-450)||(36182558-36182901)
chr4 (269-368)||(41382155-41382254)
chr4 (274-367)||(18734740-18734833)
chr4 (333-389)||(43273656-43273712)
chr4 (333-397)||(43303915-43303979)
[»] chr3 (8 HSPs)
chr3 (13-450)||(46189411-46189856)
chr3 (269-388)||(18381240-18381359)
chr3 (274-388)||(55366797-55366911)
chr3 (283-376)||(2427131-2427224)
chr3 (271-388)||(38355532-38355646)
chr3 (250-346)||(52194488-52194584)
chr3 (152-195)||(30793267-30793310)
chr3 (333-387)||(14307454-14307508)
[»] chr8 (4 HSPs)
chr8 (20-450)||(12340492-12340931)
chr8 (44-450)||(37165900-37166318)
chr8 (269-374)||(36024703-36024808)
chr8 (271-388)||(29721749-29721866)
[»] chr6 (7 HSPs)
chr6 (13-450)||(8384410-8384872)
chr6 (270-386)||(13563775-13563891)
chr6 (271-386)||(32363252-32363367)
chr6 (345-434)||(26513982-26514072)
chr6 (283-355)||(17251909-17251981)
chr6 (149-220)||(20347956-20348027)
chr6 (348-388)||(20348165-20348205)
[»] chr1 (6 HSPs)
chr1 (13-232)||(6689429-6689648)
chr1 (13-200)||(22565976-22566163)
chr1 (269-376)||(38070015-38070122)
chr1 (244-343)||(22566217-22566316)
chr1 (155-189)||(27393685-27393719)
chr1 (346-388)||(40563397-40563439)
[»] chr2 (4 HSPs)
chr2 (270-388)||(13352787-13352905)
chr2 (283-388)||(39073339-39073444)
chr2 (271-388)||(3704913-3705030)
chr2 (118-220)||(33281110-33281212)
[»] chr7 (2 HSPs)
chr7 (259-388)||(38076221-38076350)
chr7 (271-388)||(14747338-14747455)
[»] scaffold0189 (1 HSPs)
scaffold0189 (345-388)||(6346-6389)
[»] scaffold0057 (1 HSPs)
scaffold0057 (164-211)||(2968-3015)
[»] chr5 (4 HSPs)
chr5 (149-191)||(15439765-15439807)
chr5 (155-189)||(18893550-18893584)
chr5 (348-380)||(27297661-27297693)
chr5 (155-191)||(35637385-35637421)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 56337722 - 56337275
Alignment:
Q  13 aatatcgcaatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacaga 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  56337722 aatatagcaatgaatgaacatatgaagtgttgattcgtcgttcccgcaccccgccacacaatatttggctgcaggttggatgataccacgctataacaga 56337623  T
Q  113 tttagttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56337622 tttagttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcac 56337523  T
Q  213 caaaaggatcagcctgggta----------ggtaagctctgcgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagt 302  Q
    ||||||||||||||||||||          |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  56337522 caaaaggatcagcctgggtagtaagaatttggtaagctctgcgcacggtgtaaccccccacaatgtcagggagccaccgccacctgtctgaaacatcagt 56337423  T
Q  303 ctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgttgctcccctacct 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  56337422 ctgcacaacaaaattgttaagtaatcggagacactcgcctaacaactcctcctcctactcccacaaccgtctcctccaactccacgttgctcccctacct 56337323  T
Q  403 ctcatcctagagagaacatttcaacgaccgtaatcaacttattcaacg 450  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  56337322 ctcatcctagagagaacatttcagcgaccgtaatcaacttattcaacg 56337275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 450
Target Start/End: Original strand, 36182558 - 36182901
Alignment:
Q  117 gttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcaccaaa 216  Q
    ||||||| ||||| |||| || ||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||    
T  36182558 gttttgtaggcaatctgtcccgcaacaacctccatgctaaaatagagaccttcaaaggtacctgcttatgccaaacaagatgtctcgtttcatcaccgaa 36182657  T
Q  217 aggatcagcctgggtag----------gtaagctctgcgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgc 306  Q
    |  | |  |||| ||||          ||| ||||  ||||||||||| ||||||  |||| |||||||| || | |||||||| | |||||||||||||    
T  36182658 aatagccacctgagtagttagaatttggtacgctccacgcacagtgta-ccccccgtaatgtcagggagctactgccacctgtcagtaacatcagtctgc 36182756  T
Q  307 acaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgttgct-cccctacctctc 405  Q
    | ||||||||||||||||||   | ||||| | |||| ||||||||||||||| ||||| |||| ||||||||| ||||||| | || |||||||||| |    
T  36182757 aaaacaaaattgttaagtaaaaagcgacacacccctagcaactcctcctcccactcccataaccttctcctccatctccacgcttctccccctacctccc 36182856  T
Q  406 atcctagagagaacatttcaacgaccgtaatcaacttattcaacg 450  Q
    |||||||| ||||||  |||  ||| |||||||  ||||||||||    
T  36182857 atcctagacagaacacctcagtgactgtaatcattttattcaacg 36182901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 41382155 - 41382254
Alignment:
Q  269 cagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaa 368  Q
    |||| |||||| | |||||||| |||||||||||||||||||||||||  | ||||||  || |||||||||||| || || ||||||||||||||||||    
T  41382155 caggaagccactgccacctgtcagaaacatcagtctgcacaacaaaatcatcaagtaaacggcgacactcgcctatcatctgctcctcccaatcccacaa 41382254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 18734740 - 18734833
Alignment:
Q  274 agccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccaca 367  Q
    |||||| | |||||||| ||||||||||| |||||||||||||| | ||||||  || |||||||| ||| || ||||||||||||||||||||    
T  18734740 agccactgccacctgtcagaaacatcagtatgcacaacaaaattatcaagtaaacggcgacactcgtctatcatctcctcctcccaatcccaca 18734833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 43273656 - 43273712
Alignment:
Q  333 acactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgt 389  Q
    |||||| |||||||  |||||||||||| ||||||||||||||||||| ||||||||    
T  43273656 acactcccctaacatatcctcctcccaaacccacaaccgtctcctccacctccacgt 43273712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 43303915 - 43303979
Alignment:
Q  333 acactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgttgctcccc 397  Q
    |||||| |||||||  |||||||| ||| |||||| |||||||||||| ||||| ||||| ||||    
T  43303915 acactcccctaacatatcctcctctcaaacccacatccgtctcctccacctccatgttgcgcccc 43303979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 46189411 - 46189856
Alignment:
Q  13 aatatcgcaatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacaga 112  Q
    |||||| ||| ||||||||| |||||||  || |||||||||||| |||||| || ||||||  |||||||||||||||||||||||||||||||| |||    
T  46189411 aatatcacaacgaatgaacaaatgaagtactgtttcgtcgttcccacaccccaccgcacaatgattggctgcgggttggatgataccacgccataaaaga 46189510  T
Q  113 tttagttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcac 212  Q
    ||| |||||||||||||||||| || ||||||| | || | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |    
T  46189511 ttt-gttttgttggcaacctgtcccgcaacaacgtccatgatagaatagagaccttcaatggtacctgcttatgtcaaacaagatctctcgtttcatcgc 46189609  T
Q  213 caaaaggatcagcctgggtag----------gtaagctctgcgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagt 302  Q
    |  ||| |||| |||||||||          |||||||| || ||| |||||||||||| ||||| |||||||||||   |||||||| |||||||||||    
T  46189610 ctgaagaatcatcctgggtagtaagtatttggtaagctccgctcacggtgtaaccccccgcaatgtcagggagccactaccacctgtcagaaacatcagt 46189709  T
Q  303 ctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgttgctcccctacct 402  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||| |  ||||||||||||||||||||||||||||||||    
T  46189710 ctgcacaacaaaattgttaagtaattggcgacactcacctaacaactcctcctctcactcccac-attgtctcctccaactccacgttgctcccctacct 46189808  T
Q  403 ctcatcctagagagaacatttcaacgaccgtaatcaacttattcaacg 450  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  46189809 cccatcctagagagaacatttcagcgaccgtaatcaacttattcaacg 46189856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 18381240 - 18381359
Alignment:
Q  269 cagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaa 368  Q
    ||||||||||| | ||| |||| ||||||||||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||||   ||||||    
T  18381240 cagggagccactgccacttgtcagaaacatcagtttgcacaacaaaattgttaagtaaaaggcgacactcgcctaacaactcctcctcccacgaccacaa 18381339  T
Q  369 ccgtctcctccaactccacg 388  Q
    |||||||||||| |||||||    
T  18381340 ccgtctcctccatctccacg 18381359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 55366797 - 55366911
Alignment:
Q  274 agccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtc 373  Q
    |||||| | |||||||| ||||||||||| ||||||| |||| | |||||||   || ||||||||||||||||||||||||||||  |||||||| |||    
T  55366797 agccactgccacctgtcagaaacatcagtatgcacaataaaagtattaagtagcaggcgacactcgcctaacaactcctcctcccacacccacaacggtc 55366896  T
Q  374 tcctccaactccacg 388  Q
    |||||||||||||||    
T  55366897 tcctccaactccacg 55366911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 2427224 - 2427131
Alignment:
Q  283 cacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcc 376  Q
    |||||||| |||||||||||||| ||||||||||| | ||||||  || || | ||||||| || ||||||||||||||||||||| |||||||    
T  2427224 cacctgtcagaaacatcagtctgtacaacaaaattatcaagtaaacggcgaaattcgcctatcatctcctcctcccaatcccacaaacgtctcc 2427131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 38355646 - 38355532
Alignment:
Q  271 gggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaacc 370  Q
    ||||||||| | |||||||| ||||||||||| ||||||| |||| | ||||||||   |  ||||||||||||||    |||||||||  ||||||||     
T  38355646 gggagccactgccacctgtcagaaacatcagtatgcacaataaaagtattaagtaacaagcaacactcgcctaaca---tctcctcccacacccacaacg 38355550  T
Q  371 gtctcctccaactccacg 388  Q
    |||||||||| |||||||    
T  38355549 gtctcctccagctccacg 38355532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 52194584 - 52194488
Alignment:
Q  250 gtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaaca 346  Q
    ||||| || ||| ||||| | ||||||||| | |||||||| ||||||||||| ||||||| |||| | ||||||||  ||  ||||||||||||||    
T  52194584 gtgtagcctcccccaatgtccgggagccactgccacctgtcagaaacatcagtatgcacaataaaagtattaagtaacaggcaacactcgcctaaca 52194488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 30793310 - 30793267
Alignment:
Q  152 gctagaatagagaccttcaatggtacctgcttatgccaaacaag 195  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||    
T  30793310 gctagaatagagaccttcaatggaatctgcttatgtcaaacaag 30793267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 14307454 - 14307508
Alignment:
Q  333 acactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccac 387  Q
    |||||| |||||||  || ||||||||  ||||||||||||||||||||||||||    
T  14307454 acactcccctaacatgtcttcctcccatgcccacaaccgtctcctccaactccac 14307508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 12340492 - 12340931
Alignment:
Q  20 caatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacagatttagtt 119  Q
    ||||||| ||||||||| | |  |||||||  |||||| |||||| ||| || ||   |||| |||||||| || ||||||||||  ||||  ||  |||    
T  12340492 caatgaaagaacatatgtattaatgattcgatgttcccacaccccgccatacgatgaatggccgcgggttgtataataccacgcctcaacaagttctgtt 12340591  T
Q  120 ttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcaccaaaagg 219  Q
    |||||||||| |||| ||  ||||||||  |||||||||||||||||||||| |||||||| |||||||||||||||| | |||| ||||| |  |||||    
T  12340592 ttgttggcaatctgtcccgtaacaacctctaggctagaatagagaccttcaaaggtacctgtttatgccaaacaagatatgtcgtttcatcgcgtaaagg 12340691  T
Q  220 atcagcctgggtag----------gtaagctctgcgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgcaca 309  Q
    | || | |||||||          ||||||||  | ||||||||| ||||| |||||| ||||||||||| | |||||||| ||| |||||||||||| |    
T  12340692 agcaacatgggtagtaagaatttggtaagctccacacacagtgta-ccccctacaatgtcagggagccactgccacctgtcagaagcatcagtctgcaaa 12340790  T
Q  310 acaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacgttgctcccctacctctcatcc 409  Q
    |||||||| |||||||| ||| ||||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||||| || ||    
T  12340791 acaaaattattaagtaaatggcgacactcccctaataactcctcctcccactcccacaaccttctcctccatctccacgctgctcccctacctcccaacc 12340890  T
Q  410 tagagagaacatttcaacgaccgtaatcaacttattcaacg 450  Q
    |||||||| ||  |||  ||| |||||||| ||||||||||    
T  12340891 tagagagatcacatcagtgactgtaatcaatttattcaacg 12340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 44 - 450
Target Start/End: Complemental strand, 37166318 - 37165900
Alignment:
Q  44 gattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacagatttagttttgttggcaacctgtgccacaaca 143  Q
    ||||||| ||||||||||||| ||||||| |   || | |||||||| || ||||| ||||  || |||||  || |||||||||| |||| || |||||    
T  37166318 gattcgttgttcccgcaccccgccacacactgaatgtccgcgggttgaataatacctcgcctcaaaagattatgtattgttggcaatctgtcccgcaaca 37166219  T
Q  144 accttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcaccaaaaggatcagcctggg----------tag 233  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| | |  || | |          | |    
T  37166218 accttcatgctaaaatagagaccttcaaaggtacctgcttatgccaaacaagatctctcgtttcatcacctaaagtagctaccagagtcgttagaatttg 37166119  T
Q  234 gtaagctctgcgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggaga 333  Q
    ||| ||||  |||| |||||| || | |  |||| ||||||||||| | |||||||| | ||||||| |||||||||| |||||||||| |||  || ||    
T  37166118 gtacgctccacgcatagtgtacccactcgaaatgtcagggagccactgccacctgtcagtaacatcattctgcacaacgaaattgttaaataaaaggcga 37166019  T
Q  334 cactcgcctaacaact-cctcctcccaatcccacaaccgtctcctccaactccacgttgct-cccctacctctcatcctagagagaacatttcaacgacc 431  Q
    ||||   ||| ||||| || ||||||| |||||||||| | ||||||| ||||||| | || |||||||||| ||||||||  | ||||  |||| |||     
T  37166018 cactactctagcaactcccacctcccactcccacaaccttatcctccatctccacgcttctccccctacctcccatcctagtaaaaacacctcaaagact 37165919  T
Q  432 gtaatcaacttattcaacg 450  Q
    |||||||  ||||||||||    
T  37165918 gtaatcattttattcaacg 37165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 36024703 - 36024808
Alignment:
Q  269 cagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaa 368  Q
    |||| |||||| | |||||||| |||||||||||||||||||||||||| | ||||||  || |||||| ||||| || || ||||||||||||||||||    
T  36024703 caggaagccactgccacctgtcagaaacatcagtctgcacaacaaaattatgaagtaaacggcgacacttgcctatcatcttctcctcccaatcccacaa 36024802  T
Q  369 ccgtct 374  Q
    ||||||    
T  36024803 ccgtct 36024808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 29721866 - 29721749
Alignment:
Q  271 gggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaacc 370  Q
    ||||||||| | |||||||| ||||||||||| ||||||| |||| | ||||||||   |  |||||||||||||| ||||||||||||  |||||||      
T  29721866 gggagccactgccacctgtcagaaacatcagtatgcacaataaaagtattaagtaacatgcaacactcgcctaacatctcctcctcccacacccacaatg 29721767  T
Q  371 gtctcctccaactccacg 388  Q
    |||||||||| |||||||    
T  29721766 gtctcctccagctccacg 29721749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 8384872 - 8384410
Alignment:
Q  13 aatatcgcaatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcg----ggttggatgataccacgccataa 108  Q
    |||||| || |||||||||||||| | |  |||||||| |||||| |||||| ||||||||||  || | |||    ||||| || ||||| ||||  ||    
T  8384872 aatatcacagtgaatgaacatatgtaatactgattcgttgttcccacaccccgccacacaataaatgtccgcgcgcgggttgaataatacctcgcctcaa 8384773  T
Q  109 cagatttagttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtca 208  Q
     |||||  |||||||||| ||  ||| || ||||||||| || | |||||||||||||||||| |||||| || |||||||||||||||||||||| |||    
T  8384772 aagattctgttttgttggtaatttgtcccgcaacaacctccaagatagaatagagaccttcaaaggtaccagcctatgccaaacaagatctctcgtttca 8384673  T
Q  209 tcaccaaaaggatcagcctgggtag----------gtaagctctgcgcacagtgtaaccccccac----------aatgacagggagccaccgtcacctg 288  Q
    ||||  |||| | |  |||  ||||          ||||||||  ||||||||||| |||||| |          |||| || |||||||| | ||||||    
T  8384672 tcacttaaagtagctacctatgtagtaagaatttggtaagctccacgcacagtgtaccccccccccccccccggtaatgtcaaggagccactgccacctg 8384573  T
Q  289 tctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaactccacg 388  Q
    || | |||| ||||||||| ||||||||||||||||||| || ||||||| |||| ||||||||||||||| |||||||||| ||||||||| |||||||    
T  8384572 tcagtaacaacagtctgcaaaacaaaattgttaagtaataggcgacactcccctagcaactcctcctcccactcccacaaccttctcctccatctccacg 8384473  T
Q  389 -ttgctcccctacctctcatcctagagagaacatttcaacgaccgtaatcaacttattcaacg 450  Q
     ||   |||||||||| || |||||||||||||  ||| |||| |||||||  ||||||||||    
T  8384472 cttcaccccctacctcccagcctagagagaacacctcagcgactgtaatcattttattcaacg 8384410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 386
Target Start/End: Complemental strand, 13563891 - 13563775
Alignment:
Q  270 agggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaac 369  Q
    |||||||||| | |||||||| |||||||| || || || |||||||||||||||||     |||||||||||||||||||||||||| |  |||||||     
T  13563891 agggagccactgccacctgtcagaaacatctgtttgaactacaaaattgttaagtaaaatacgacactcgcctaacaactcctcctcctacacccacaat 13563792  T
Q  370 cgtctcctccaactcca 386  Q
    ||||||||||| |||||    
T  13563791 cgtctcctccatctcca 13563775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 386
Target Start/End: Original strand, 32363252 - 32363367
Alignment:
Q  271 gggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaacc 370  Q
    ||||||||| | |||||||| ||||||||||| |||| || |||| | ||||||||  ||  |||||||||||||| ||||||||||||  ||||||||     
T  32363252 gggagccactgccacctgtcagaaacatcagtatgcataataaaagtattaagtaacaggcaacactcgcctaacatctcctcctcccacacccacaacg 32363351  T
Q  371 gtctcctccaactcca 386  Q
    |||||||||| |||||    
T  32363352 gtctcctccagctcca 32363367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 434
Target Start/End: Original strand, 26513982 - 26514072
Alignment:
Q  345 caactcctcctcccaatcccacaaccgtctcctccaactccacgttgct-cccctacctctcatcctagagagaacatttcaacgaccgta 434  Q
    |||||||||||||||| |||||||||  ||||||||||||||||  ||| |||||||||| || |||||||| ||||||||| | ||||||    
T  26513982 caactcctcctcccaagcccacaacctcctcctccaactccacgccgctccccctacctcccaacctagagaaaacatttcagccaccgta 26514072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 17251981 - 17251909
Alignment:
Q  283 cacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcct 355  Q
    |||||||  ||||||||||| ||||||||||||||||||||| |  || ||||||| ||||||||||||||||    
T  17251981 cacctgtgagaaacatcagtttgcacaacaaaattgttaagtgaaaggcgacactcacctaacaactcctcct 17251909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 20347956 - 20348027
Alignment:
Q  149 caggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcaccaaaagga 220  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| |  || ||||||||| ||||| ||| ||||    
T  20347956 caggcaagaatagagaccttcaagggtacctgcttgtgccagatgaggtctctcgtgacatcaacaagagga 20348027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 20348165 - 20348205
Alignment:
Q  348 ctcctcctcccaatcccacaaccgtctcctccaactccacg 388  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  20348165 ctcctcctctcaatcccacaacattctcctccaactccacg 20348205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 6689429 - 6689648
Alignment:
Q  13 aatatcgcaatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacaga 112  Q
    |||||| || |||| ||||||| |||| |||||||||||||| || |||| | || || | |||||||| |||||||| |||||||| ||   ||||| |    
T  6689429 aatatcacagtgaaagaacatacgaagagttgattcgtcgtttccacacctcgccccatagtatttggccgcgggttgtatgatacctcgatgtaacaaa 6689528  T
Q  113 tttagttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcac 212  Q
    || ||||||||||||| ||||| |  || |||||| ||||||||||||||||||||||| | ||||| |||| ||||||||||||||  | ||||  |||    
T  6689529 ttaagttttgttggcagcctgtcctgcagcaacctccaggctagaatagagaccttcaaagatacctacttaagccaaacaagatcttccatgtcgccac 6689628  T
Q  213 caaaaggatcagcctgggta 232  Q
    | | |||||| |||||||||    
T  6689629 ctataggatccgcctgggta 6689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 22565976 - 22566163
Alignment:
Q  13 aatatcgcaatgaatgaacatatgaagtgttgattcgtcgttcccgcacccctccacacaatatttggctgcgggttggatgataccacgccataacaga 112  Q
    ||||| ||||||||| |||||||| || |||| ||| ||||| |||||||||  ||||||||| ||||  | |||||| || || |||||||  | ||||    
T  22565976 aatattgcaatgaataaacatatgtagagttgtttcatcgtttccgcaccccgacacacaatacttggacgtgggttgaatcatgccacgccggagcaga 22566075  T
Q  113 tttagtttt-gttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctc 200  Q
    || |||||| ||||| ||||||| || || |||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  22566076 tt-agttttagttggtaacctgtcccgcagcaacctccaagctagaatagagaccttcaaaggtatctgtttatgccaaacaagatctc 22566163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 38070015 - 38070122
Alignment:
Q  269 cagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaa 368  Q
    |||| |||||| | |||||||| |||||||||||||||||||||||||| | ||||||  || |||||||||||| || |||||||||||||||||||||    
T  38070015 caggtagccactgccacctgtcagaaacatcagtctgcacaacaaaattatcaagtaaacggcgacactcgcctatcatctcctcctcccaatcccacaa 38070114  T
Q  369 ccgtctcc 376  Q
     |||||||    
T  38070115 acgtctcc 38070122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 22566217 - 22566316
Alignment:
Q  244 cgcacagtgtaaccccccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgccta 343  Q
    ||||| || || |||||| ||||| || |||||||| | |||||||| |||||||||||||||| ||||||||| | |||||| ||  ||||||||||||    
T  22566217 cgcacggtatagcccccctcaatgtcaaggagccactgccacctgtcagaaacatcagtctgcaaaacaaaattatcaagtaactgtcgacactcgccta 22566316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 27393719 - 27393685
Alignment:
Q  155 agaatagagaccttcaatggtacctgcttatgcca 189  Q
    ||||||||||||||||| |||||||||||||||||    
T  27393719 agaatagagaccttcaagggtacctgcttatgcca 27393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 40563439 - 40563397
Alignment:
Q  346 aactcctcctcccaatcccacaaccgtctcctccaactccacg 388  Q
    ||||||||||||||  ||||||| |||||||||||||||||||    
T  40563439 aactcctcctcccacgcccacaaacgtctcctccaactccacg 40563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 388
Target Start/End: Original strand, 13352787 - 13352905
Alignment:
Q  270 agggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaac 369  Q
    |||||| ||| | |||||| | ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  13352787 agggagtcactgccacctgccagaaacatcagtttgcacaacaaaattgttaagtaaatggcgacactcgcctaacaactcctcctcccacgcccacaac 13352886  T
Q  370 cgtctcctccaactccacg 388  Q
     ||||  |||| |||||||    
T  13352887 tgtcttttccatctccacg 13352905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 39073339 - 39073444
Alignment:
Q  283 cacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaaccgtctcctccaac 382  Q
    ||||||||  |||||||||| |||||||||||||||||||||||  || ||||||||| ||||| ||||||||||||  |||||||| ||||||||||||    
T  39073339 cacctgtcaaaaacatcagtatgcacaacaaaattgttaagtaaaaggcgacactcgcttaacatctcctcctcccacgcccacaacggtctcctccaac 39073438  T
Q  383 tccacg 388  Q
    ||||||    
T  39073439 tccacg 39073444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 3704913 - 3705030
Alignment:
Q  271 gggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaacc 370  Q
    ||||||||| | || ||||  ||||||||||| |||| || |||| | ||||||||  ||  ||||| |||||||| ||||||||||||  ||||||||     
T  3704913 gggagccactgccatctgttagaaacatcagtatgcataataaaagtattaagtaacaggcaacacttgcctaacatctcctcctcccacacccacaacg 3705012  T
Q  371 gtctcctccaactccacg 388  Q
    |||||||||| |||||||    
T  3705013 gtctcctccagctccacg 3705030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 33281110 - 33281212
Alignment:
Q  118 ttttgttggcaacctgtgccacaacaaccttcaggctagaatagagaccttcaatggtacctgcttatgccaaacaagatctctcgtgtcatcaccaaaa 217  Q
    ||||||||||| |||||  | |||||| || || || ||||||||||||||||  |||||||||||||   |||  |||||||||||| ||||| | |||    
T  33281110 ttttgttggcagcctgtcacgcaacaatctccaagcaagaatagagaccttcaggggtacctgcttatttgaaaggagatctctcgtgacatcaactaaa 33281209  T
Q  218 gga 220  Q
    |||    
T  33281210 gga 33281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 388
Target Start/End: Complemental strand, 38076350 - 38076221
Alignment:
Q  259 cccacaatgacagggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctccc 358  Q
    ||||||||| | ||||||||| | || ||||  ||||||||||| |||| || |||| | ||||||||  ||  |||||||||||||| |||||||||||    
T  38076350 cccacaatgtccgggagccactgccaactgtaagaaacatcagtatgcataataaaagtattaagtaacaggcaacactcgcctaacatctcctcctccc 38076251  T
Q  359 aatcccacaaccgtctcctccaactccacg 388  Q
    |  |||||||| |||||||||| |||||||    
T  38076250 acacccacaacggtctcctccagctccacg 38076221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 14747338 - 14747455
Alignment:
Q  271 gggagccaccgtcacctgtctgaaacatcagtctgcacaacaaaattgttaagtaattggagacactcgcctaacaactcctcctcccaatcccacaacc 370  Q
    ||||||||| | || ||||| ||||||||||| ||||||| |||| | ||||||||   |  |||||||||||||| ||||||||||||  ||||||       
T  14747338 gggagccactgccagctgtcagaaacatcagtatgcacaataaaagtattaagtaacaagcaacactcgcctaacatctcctcctcccacacccacagag 14747437  T
Q  371 gtctcctccaactccacg 388  Q
    |||||||||| |||||||    
T  14747438 gtctcctccagctccacg 14747455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 6346 - 6389
Alignment:
Q  345 caactcctcctcccaatcccacaaccgtctcctccaactccacg 388  Q
    |||||||||||||||  ||||||| |||||||||||||||||||    
T  6346 caactcctcctcccacacccacaaacgtctcctccaactccacg 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 3015 - 2968
Alignment:
Q  164 accttcaatggtacctgcttatgccaaacaagatctctcgtgtcatca 211  Q
    |||||||| ||||||||||||||||||| ||||||||| ||| |||||    
T  3015 accttcaaaggtacctgcttatgccaaataagatctcttgtgacatca 2968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 15439807 - 15439765
Alignment:
Q  149 caggctagaatagagaccttcaatggtacctgcttatgccaaa 191  Q
    |||||||||||||| |||||||| |||||||| ||||||||||    
T  15439807 caggctagaatagaaaccttcaagggtacctggttatgccaaa 15439765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 18893550 - 18893584
Alignment:
Q  155 agaatagagaccttcaatggtacctgcttatgcca 189  Q
    |||||||||||||||||||||||||||||| ||||    
T  18893550 agaatagagaccttcaatggtacctgcttacgcca 18893584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 27297661 - 27297693
Alignment:
Q  348 ctcctcctcccaatcccacaaccgtctcctcca 380  Q
    ||||||||||||| |||||||||||||||||||    
T  27297661 ctcctcctcccaaacccacaaccgtctcctcca 27297693  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 35637385 - 35637421
Alignment:
Q  155 agaatagagaccttcaatggtacctgcttatgccaaa 191  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  35637385 agaatagagaccttcaagggtaccagcttatgccaaa 35637421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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