View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_40 (Length: 230)

Name: NF3271_low_40
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_40
NF3271_low_40
[»] chr4 (4 HSPs)
chr4 (1-216)||(43992635-43992850)
chr4 (55-129)||(19319284-19319356)
chr4 (160-213)||(19319231-19319284)
chr4 (48-142)||(12617193-12617287)
[»] chr2 (3 HSPs)
chr2 (1-213)||(33032798-33033024)
chr2 (59-100)||(20467734-20467775)
chr2 (59-100)||(27068920-27068961)
[»] chr8 (1 HSPs)
chr8 (77-224)||(18477947-18478094)
[»] chr7 (1 HSPs)
chr7 (50-219)||(21114954-21115123)
[»] chr6 (1 HSPs)
chr6 (46-103)||(19496936-19496993)
[»] chr5 (1 HSPs)
chr5 (59-100)||(42761838-42761879)
[»] chr3 (2 HSPs)
chr3 (59-100)||(2436162-2436203)
chr3 (49-101)||(14509706-14509758)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43992850 - 43992635
Alignment:
Q  1 tctgtacggactcgttggttaatcaatgggttccgacatgctcgttagttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43992850 tctgtacggactcgttggttaatcaatgggttccgacatgctcgttggttgatgtttttatggaaggttatcccttcatatggtttaaaagtttaggtac 43992751  T
Q  101 tccaagggcagttgaggaacggttggattgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaaggtggaaaatttagtatccccgact 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  43992750 tccaagggcagttgaggaacgattggattgtgcacttgctaacgcatcctggtttcagctatttcctaatgcgaaggtggaaaatttagtagccccggct 43992651  T
Q  201 tctgatcattatccga 216  Q
    ||| ||||||||||||    
T  43992650 tctaatcattatccga 43992635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 19319356 - 19319284
Alignment:
Q  55 tttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggatt 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||  | ||||| ||| ||||||||||||||||||    
T  19319356 tttttatggaaggttatcacttcacatggtttaaaagtttagg--ccccaagagcaattgaggaacggttggatt 19319284  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 19319284 - 19319231
Alignment:
Q  160 tatttcctaatgcgaaggtggaaaatttagtatccccgacttctgatcattatc 213  Q
    ||||||| ||||||||||||||||||||||||  ||| || |||||||||||||    
T  19319284 tatttccaaatgcgaaggtggaaaatttagtagtcccaacctctgatcattatc 19319231  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 12617287 - 12617193
Alignment:
Q  48 gttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaa 142  Q
    |||||||| |||| |||||| || | ||||||  | ||||||||| | ||||| || || |||||||| ||| ||||||||||||| ||||||||    
T  12617287 gttgatgtctttaaggaaggatacctcttcactcgatttaaaagtctgggtacgccgagagcagttgaagaaaggttggattgtgctcttgctaa 12617193  T

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Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33033024 - 33032798
Alignment:
Q  1 tctgtacggactcgttggttaatcaatgggttccgacatgct-------------cgttagttgatgtttttatggaaggttatcccttcacatggttta 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||               || ||||||||||||||||||||||||||||||||||||||||    
T  33033024 tctgtacgggctcgttggttaatcaatgggttccgacatgctgcatctgatgcaagtttggttgatgtttttatggaaggttatcccttcacatggttta 33032925  T
Q  88 aaagtttaggtactccaa-gggcagttgaggaacggttggattgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaaggtggaaaatt 186  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  33032924 aaagtttaggtactccaatgggcagttgaggaacggttggatcgtgcacttactaatgcatcctggtttcagttatttcctaatgcgaaggtggaaaatt 33032825  T
Q  187 tagtatccccgacttctgatcattatc 213  Q
    ||||| |||||||||||||||| ||||    
T  33032824 tagtagccccgacttctgatcactatc 33032798  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 20467734 - 20467775
Alignment:
Q  59 tatggaaggttatcccttcacatggtttaaaagtttaggtac 100  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  20467734 tatggaaggttatccgttcacatggtttaaaagtttgggtac 20467775  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 27068920 - 27068961
Alignment:
Q  59 tatggaaggttatcccttcacatggtttaaaagtttaggtac 100  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  27068920 tatggaaggttatccgttcacctggtttaaaagtttgggtac 27068961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 18477947 - 18478094
Alignment:
Q  77 cacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaag 176  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||| |||||||||||||||||    
T  18477947 cacatggtttaaaattttaggtactccaagggcagttgaggaacggttggatcatgcacttgctaacacatcctggtttcagttatttcctaatgcgaag 18478046  T
Q  177 gtggaaaatttagtatccccgacttctgatcattatccgattcatctc 224  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  18478047 gtggaaaatttagtagccccggcttctgatcattatccgattcttctc 18478094  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 21114954 - 21115123
Alignment:
Q  50 tgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaacgcatca 149  Q
    |||| ||||||||||||| ||||  || || ||||| ||||| |||||||| ||||||||||||||||||||||| ||  |||  || ||||| ||| ||    
T  21114954 tgatatttttatggaaggatatctgtttacttggttcaaaagcttaggtacaccaagggcagttgaggaacggttagaccgtggtctcgctaatgcaaca 21115053  T
Q  150 tggtttcagctatttcctaatgcgaaggtggaaaatttagtatccccgacttctgatcattatccgattc 219  Q
    |||||| |  ||||||| |||||||||||||| ||  ||||  | ||| ||||||| |||||||||||||    
T  21115054 tggtttgatttatttccaaatgcgaaggtggagaacctagtcgctccggcttctgaccattatccgattc 21115123  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 19496936 - 19496993
Alignment:
Q  46 tagttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactcc 103  Q
    |||| ||||||  ||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  19496936 tagtagatgttcatatggaaggttatccgttcacctggttcaaaagtttgggtactcc 19496993  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 42761838 - 42761879
Alignment:
Q  59 tatggaaggttatcccttcacatggtttaaaagtttaggtac 100  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  42761838 tatggaaggttatccgttcacctggtttaaaagtttgggtac 42761879  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 2436162 - 2436203
Alignment:
Q  59 tatggaaggttatcccttcacatggtttaaaagtttaggtac 100  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  2436162 tatggaaggttatcctttcacatggtttaagagtttgggtac 2436203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 14509758 - 14509706
Alignment:
Q  49 ttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtact 101  Q
    ||||||||  ||||||||||||||  ||||| |||||||||||||| ||||||    
T  14509758 ttgatgttcatatggaaggttatctgttcacttggtttaaaagtttgggtact 14509706  T

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