View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_5 (Length: 432)
Name: NF3271_low_5
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 41117900 - 41118297
Alignment:
| Q |
18 |
agcttacatgtgtagaagttgcgcatatgcaaacaaggaaataaaatataaatacaaacttataaggcatatgtggggtgtgggggttggagacaaatgg |
117 |
Q |
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| T |
41117900 |
agcttacatgtgtagaagttgcgcatatgcaaacaaggaaataaaatataaatacaaacttataaggcatatgtggggtgtgggggttggagacaaatgg |
41117999 |
T |
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| Q |
118 |
gtttgagcaaaaggtatccaaattctaacctggatataagagtgtggccgcacctgatgggcaatgggacctgcatcctggaaaatcagtataaaaactc |
217 |
Q |
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| T |
41118000 |
gtttgagcaaaagatatccaaattctaacctggatataagagtgtggccgcacctgatgggcaatgggacctgcatcctggaaaatcagtataaaaactc |
41118099 |
T |
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| Q |
218 |
taatttgatgttggaaataaattttaagaaagttaagatttgatcatcatattaacttctctaagatgcaaaccagataaaatgtaattttacggaagcc |
317 |
Q |
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| T |
41118100 |
tcatttgatgttggaaataaattttaagaaagttaagatttgatcatcatattaacttctctaagatgcaaacctgataaaatgtaattttacggaagcc |
41118199 |
T |
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| Q |
318 |
ttcagccccacattgagtgcagaaaatccctgatgacttgtaaagaccctacaacaaatcaaattcatagtaagtaagcacatcccccgccctctctg |
415 |
Q |
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| T |
41118200 |
ttcagccccacattgagtgcagaaaatcccagatgacttgtaaagaccctacaacaaatcaaattcatagtaagtaagcacatcccccgccccctctg |
41118297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 218 - 408
Target Start/End: Original strand, 41107635 - 41107822
Alignment:
| Q |
218 |
taatttgatgttggaaataaattttaagaaagttaagatttgatcatcatattaacttctctaagatgcaaaccagataaaatgtaattttacggaagcc |
317 |
Q |
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| T |
41107635 |
taatttgatgt-ggaaattaattttaaggaagtaaa--tctgatcatcatattaactcctctaagatgcaaacctgataaaatgtaattttacggaagcc |
41107731 |
T |
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| Q |
318 |
ttcagccccacattgagtgcagaaaatccctgatgacttgtaaagaccctacaacaaatcaaattcatagtaagtaagcacatcccccgcc |
408 |
Q |
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| T |
41107732 |
ttcagcctcacattgagtacagaaattcccagatgacttgtaaagaccctacgaaaaatcaaatttatattaagtagacacattccccgcc |
41107822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 41105803 - 41105906
Alignment:
| Q |
104 |
ttggagacaaatgggtttgagcaaaaggtatccaaattctaacctggatataagagtgtggccgcacctgatgggcaatgggacctgcatcctggaaaat |
203 |
Q |
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| T |
41105803 |
ttggagacaaatggatttgaggaaaaggtatccaaattctaaccttaatgtaagagtgtggccgcactggatgggccatgggacctccatcctggaaaat |
41105902 |
T |
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| Q |
204 |
cagt |
207 |
Q |
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|||| |
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| T |
41105903 |
cagt |
41105906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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