View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_6 (Length: 428)

Name: NF3271_low_6
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_6
NF3271_low_6
[»] chr4 (40 HSPs)
chr4 (182-412)||(7773464-7773694)
chr4 (182-412)||(7765834-7766064)
chr4 (205-412)||(7786679-7786886)
chr4 (189-329)||(7877945-7878085)
chr4 (291-412)||(7790381-7790502)
chr4 (291-412)||(7771696-7771817)
chr4 (187-408)||(7237386-7237601)
chr4 (340-412)||(7878733-7878805)
chr4 (289-396)||(45365875-45365982)
chr4 (332-412)||(7908644-7908724)
chr4 (292-408)||(48156072-48156188)
chr4 (181-292)||(7908528-7908639)
chr4 (342-412)||(48853033-48853103)
chr4 (344-412)||(45371713-45371781)
chr4 (341-409)||(49043810-49043878)
chr4 (350-412)||(48864395-48864457)
chr4 (351-412)||(7813838-7813899)
chr4 (349-406)||(48147358-48147415)
chr4 (350-411)||(49038518-49038579)
chr4 (292-409)||(50666617-50666734)
chr4 (289-409)||(37826632-37826752)
chr4 (351-412)||(7800998-7801059)
chr4 (348-412)||(45384531-45384595)
chr4 (200-381)||(48898953-48899131)
chr4 (351-401)||(48903316-48903366)
chr4 (289-412)||(48870859-48870982)
chr4 (289-412)||(48876163-48876286)
chr4 (289-412)||(48886545-48886668)
chr4 (342-409)||(49048197-49048264)
chr4 (342-399)||(48861640-48861697)
chr4 (353-412)||(7823332-7823391)
chr4 (364-404)||(48735058-48735098)
chr4 (352-399)||(50672860-50672907)
chr4 (350-408)||(48863625-48863683)
chr4 (351-400)||(47208238-47208287)
chr4 (199-262)||(7771610-7771673)
chr4 (199-262)||(7790295-7790358)
chr4 (361-396)||(48734174-48734209)
chr4 (205-250)||(50669300-50669345)
chr4 (206-246)||(37826798-37826838)
[»] chr5 (6 HSPs)
chr5 (298-409)||(9120071-9120182)
chr5 (298-394)||(179366-179462)
chr5 (350-412)||(42561972-42562034)
chr5 (340-412)||(29688479-29688551)
chr5 (340-409)||(29712083-29712152)
chr5 (354-408)||(29696600-29696654)
[»] chr8 (7 HSPs)
chr8 (214-390)||(4962180-4962357)
chr8 (206-412)||(15349102-15349305)
chr8 (206-408)||(12195543-12195742)
chr8 (206-408)||(12439971-12440170)
chr8 (206-408)||(12200561-12200760)
chr8 (206-408)||(12444989-12445188)
chr8 (349-399)||(4031578-4031628)
[»] chr3 (4 HSPs)
chr3 (289-412)||(47451539-47451662)
chr3 (347-408)||(11015134-11015195)
chr3 (351-408)||(11024146-11024203)
chr3 (342-408)||(11005571-11005637)
[»] chr7 (3 HSPs)
chr7 (342-412)||(48884176-48884246)
chr7 (346-397)||(30130916-30130967)
chr7 (346-407)||(30165853-30165914)
[»] chr6 (4 HSPs)
chr6 (343-406)||(21016174-21016237)
chr6 (354-412)||(21979267-21979325)
chr6 (206-256)||(21979423-21979473)
chr6 (357-397)||(14197337-14197377)
[»] chr1 (7 HSPs)
chr1 (344-415)||(24310570-24310641)
chr1 (356-411)||(24367531-24367586)
chr1 (344-411)||(24416132-24416199)
chr1 (359-415)||(24323139-24323195)
chr1 (344-412)||(24340765-24340833)
chr1 (344-412)||(24353130-24353198)
chr1 (349-412)||(24369800-24369863)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 182 - 412
Target Start/End: Complemental strand, 7773694 - 7773464
Alignment:
Q  182 cgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattag 281  Q
    |||| ||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |    
T  7773694 cgtcgtgatttacgttggaatgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaataatgttcaccatagtgcattgg 7773595  T
Q  282 tacattctggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7773594 tacattctggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 7773495  T
Q  382 gcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||| |||| |||||||||||    
T  7773494 gcattcgtcttggattaaatctcttgttctt 7773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 182 - 412
Target Start/End: Original strand, 7765834 - 7766064
Alignment:
Q  182 cgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattag 281  Q
    ||||||||| ||| || | ||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||| |    
T  7765834 cgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattgg 7765933  T
Q  282 tacattctggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 381  Q
    ||||||||||||||| ||||| |||||||| ||| ||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  7765934 tacattctggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagt 7766033  T
Q  382 gcattcgtcttggactaaaactcttgttctt 412  Q
    | ||||||| |||||||| || |||||||||    
T  7766034 gtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 205 - 412
Target Start/End: Original strand, 7786679 - 7786886
Alignment:
Q  205 cattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtattt 304  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||  || |||||||||||||||| ||||| |    
T  7786679 cattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagagttggtacattctggtttgtgggtatct 7786778  T
Q  305 ggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactc 404  Q
    || |||| ||| ||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||| ||| ||||    
T  7786779 ggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactc 7786878  T
Q  405 ttgttctt 412  Q
    ||||||||    
T  7786879 ttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 7877945 - 7878085
Alignment:
Q  189 atttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattc 288  Q
    |||||||||||| || |||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7877945 atttaggttggattgtcattcttacctttgatttaatggaaaagaaattgtttgagatgcctcttccaaataatgttgaccatagagcattagtacattc 7878044  T
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggcta 329  Q
    |||||||| |||||||||||||| ||| ||| |||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggcta 7878085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 7790381 - 7790502
Alignment:
Q  291 gtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 390  Q
    |||||| |||||||||||||| ||| ||| |||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  391 ttggactaaaactcttgttctt 412  Q
    ||||||||||||||||||||||    
T  7790481 ttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 7771696 - 7771817
Alignment:
Q  291 gtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 390  Q
    |||||| |||||||||||||| ||| ||| |||| ||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  391 ttggactaaaactcttgttctt 412  Q
     |||||||||||||||||||||    
T  7771796 atggactaaaactcttgttctt 7771817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 408
Target Start/End: Complemental strand, 7237601 - 7237386
Alignment:
Q  187 tgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacat 286  Q
    |||||||| || | ||| ||| |||||  ||||||||||||||| ||||  ||||||||||||| |||||| |||| |||||||||||       | | |    
T  7237601 tgatttagatttggatgtcatagttgcgcttgatttaatggaaaagaaaacgtttgagatgcctgttccaagtgattttgaccatagat------ttctt 7237508  T
Q  287 tctggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcatt 386  Q
    | |  | ||| |||||||||||||| ||| ||| |||||||| ||||| ||| |||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  7237507 tataatatgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcatt 7237408  T
Q  387 cgtcttggactaaaactcttgt 408  Q
    ||| ||||||||||||||||||    
T  7237407 cgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 7878733 - 7878805
Alignment:
Q  340 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7878733 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 45365982 - 45365875
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| |||||||||||||| | | ||| | ||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  45365982 tggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcg 45365883  T
Q  389 tcttggac 396  Q
    ||||||||    
T  45365882 tcttggac 45365875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 7908644 - 7908724
Alignment:
Q  332 gataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7908644 gataatgataaagatacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctt 7908724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 48156188 - 48156072
Alignment:
Q  292 tttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 391  Q
    ||||| |||||||||||||| ||| ||| ||||||||   |||   |||||||| | ||||||||||||||||||||| ||||||||||||||||| |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  392 tggactaaaactcttgt 408  Q
    |||||||||||||||||    
T  48156088 tggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 7908528 - 7908639
Alignment:
Q  181 acgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcatta 280  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||| ||| ||||||| |    
T  7908528 acgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaaggaagttgtttgagatacctattccaagtgattttgtccacagagcatca 7908627  T
Q  281 gtacattctggt 292  Q
    | ||||||||||    
T  7908628 ggacattctggt 7908639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 48853033 - 48853103
Alignment:
Q  342 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 45371781 - 45371713
Alignment:
Q  344 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 49043878 - 49043810
Alignment:
Q  341 aatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgtt 409  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 48864395 - 48864457
Alignment:
Q  350 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttctt 48864457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 7813838 - 7813899
Alignment:
Q  351 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 48147415 - 48147358
Alignment:
Q  349 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactctt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  350 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttct 411  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 50666617 - 50666734
Alignment:
Q  292 tttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 391  Q
    ||||| ||||||| |||| | ||||| | ||| |||||  ||| |||  ||||||||| ||||| ||||||||||| ||||||||||||||||||| |||    
T  50666617 tttgtgggtatttagagagtttcttaatttatcggctattgattatgtgaatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatct 50666716  T
Q  392 tggactaaaactcttgtt 409  Q
    ||||||||||||||||||    
T  50666717 tggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 37826752 - 37826632
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| |||||||||||||| ||||||| ||||||| | ||  | |  |||| ||||| || || || |||||||||||||||||||| ||||||||    
T  37826752 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcg 37826653  T
Q  389 tcttggactaaaactcttgtt 409  Q
    ||||||||||| |||||||||    
T  37826652 tcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 7800998 - 7801059
Alignment:
Q  351 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 7801059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 45384595 - 45384531
Alignment:
Q  348 cagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 381
Target Start/End: Original strand, 48898953 - 48899131
Alignment:
Q  200 aatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcgg 299  Q
    |||| |||||||||||||||||||| |||||||||| |||| |||||| ||| |||| ||||| | || ||||   | | || |  || |||||||| ||    
T  48898953 aatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcc-tcagga--ttgtggtttgtggg 48899049  T
Q  300 tatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 381  Q
    | |||||||| | | | ||| ||||||||    || |||||||||||||||||||||||||||||||||||||||| |||||    
T  48899050 tctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagt 48899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 48903316 - 48903366
Alignment:
Q  351 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaa 401  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 48870859 - 48870982
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| ||||||||| |||| ||| ||| |||  |||| |||| ||  | || ||||| ||||||| ||||||||||| |||||||||||| | |||    
T  48870859 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48870958  T
Q  389 tcttggactaaaactcttgttctt 412  Q
    |||||||| || ||||||||||||    
T  48870959 tcttggacaaagactcttgttctt 48870982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 48876163 - 48876286
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| ||||||||| |||| ||| ||| |||  |||| |||| ||  | || ||||| ||||||| ||||||||||| |||||||||||| | |||    
T  48876163 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48876262  T
Q  389 tcttggactaaaactcttgttctt 412  Q
    |||||||| || ||||||||||||    
T  48876263 tcttggacaaagactcttgttctt 48876286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 48886545 - 48886668
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| ||||||||| |||| ||| ||| |||  |||| |||| ||  | || ||||| ||||||| ||||||||||| |||||||||||| | |||    
T  48886545 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48886644  T
Q  389 tcttggactaaaactcttgttctt 412  Q
    |||||||| || ||||||||||||    
T  48886645 tcttggacaaagactcttgttctt 48886668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 49048264 - 49048197
Alignment:
Q  342 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgtt 409  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |||||    
T  49048264 atgatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgtt 49048197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 48861640 - 48861697
Alignment:
Q  342 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaa 399  Q
    |||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  48861640 atgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 7823332 - 7823391
Alignment:
Q  353 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||||||||||    
T  7823332 gaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctt 7823391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 48735098 - 48735058
Alignment:
Q  364 gatgaaagaatacaaagtgcattcgtcttggactaaaactc 404  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  48735098 gatgaaagaatacaaagtgaattcgtcttggactaaaactc 48735058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 50672860 - 50672907
Alignment:
Q  352 tgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaa 399  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaa 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 48863625 - 48863683
Alignment:
Q  350 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 408  Q
    ||||| |||||||||||| ||||||||  ||||||||| ||||||| ||||||||||||    
T  48863625 gttgacatatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 47208238 - 47208287
Alignment:
Q  351 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaa 400  Q
    |||||||| |||||||||||||||||||||| || || ||||||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaaa 47208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 7771610 - 7771673
Alignment:
Q  199 gaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 262  Q
    ||||| ||||||| | |||||||||||||| | |||| |||||||||||||| |||||| ||||    
T  7771610 gaatgtcattgttacgtttgatttaatggagaagaaaatgtttgagatgcctgttccaagtgat 7771673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 7790295 - 7790358
Alignment:
Q  199 gaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 262  Q
    ||||| ||||||| | |||||||||||||| | |||| |||||||||||||| |||||| ||||    
T  7790295 gaatgtcattgttacgtttgatttaatggagaagaaaatgtttgagatgcctgttccaagtgat 7790358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 48734174 - 48734209
Alignment:
Q  361 ggtgatgaaagaatacaaagtgcattcgtcttggac 396  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48734174 ggtgatgaaagaatacaaagtgcattcgtattggac 48734209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 50669300 - 50669345
Alignment:
Q  205 cattgttgcctttgatttaatggaaaggaaattgtttgagatgcct 250  Q
    |||||||||||||||||| |||||||||||| |||| || ||||||    
T  50669300 cattgttgcctttgatttgatggaaaggaaactgttagacatgcct 50669345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 37826838 - 37826798
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagat 246  Q
    |||||||||||| ||||||||||||||||| |||| |||||    
T  37826838 attgttgcctttaatttaatggaaaggaaactgttagagat 37826798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 9120071 - 9120182
Alignment:
Q  298 ggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggact 397  Q
    |||||||||||||| ||| ||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  9120071 ggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaag 9120170  T
Q  398 aaaactcttgtt 409  Q
    ||||||||||||    
T  9120171 aaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 179366 - 179462
Alignment:
Q  298 ggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttgg 394  Q
    |||||||||| ||| ||| ||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  179366 ggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 42562034 - 42561972
Alignment:
Q  350 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 29688479 - 29688551
Alignment:
Q  340 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||| || ||||| ||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctt 29688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 29712152 - 29712083
Alignment:
Q  340 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgtt 409  Q
    ||||| |||||||||||||||||||||| || ||||||| |||   || ||||||||||| |||||||||    
T  29712152 taatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 29696600 - 29696654
Alignment:
Q  354 aaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 408  Q
    |||||||||||||| || ||||||| ||||| || ||||||||||| ||||||||    
T  29696600 aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 390
Target Start/End: Complemental strand, 4962357 - 4962180
Alignment:
Q  214 ctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagc-attagtacattctggtttgtcggtatttggagaata 312  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||  | |  |  |||  || |||||||| ||||||||||||||     
T  4962357 ctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaagttatggtttgtgggtatttggagaatt 4962258  T
Q  313 tcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 390  Q
    ||| ||| ||||||  | |||| ||   |||  || ||||||||||||||||||||||||||||||| ||||||||||    
T  4962257 tctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgcattcgtc 4962180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 412
Target Start/End: Original strand, 15349102 - 15349305
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtatttg 305  Q
    |||||||| ||||||||||  ||||||||| ||||||||||||||| |||| ||||| |||| |||   ||  | ||  ||| |||||||| ||| ||||    
T  15349102 attgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgc--tggtg-attgtggtttgtgggtctttg 15349198  T
Q  306 gagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactct 405  Q
    | |||| | ||||| | ||| ||| |||| || |||||||||   |||||||||||||||||||||||||||||||| | || |||||||| || | |||    
T  15349199 gcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattct 15349298  T
Q  406 tgttctt 412  Q
    |||||||    
T  15349299 tgttctt 15349305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 12195543 - 12195742
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtatttg 305  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||   |||||| |  |   ||  |||| |||||||| ||||||||    
T  12195543 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtcc---agagcattatggtttgtgggtatttg 12195639  T
Q  306 gagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactct 405  Q
    || ||| ||| ||| |||||  || | ||  || ||||   |||||||||||||||| ||||||||||||||||   || || ||||||||||| |||||    
T  12195640 gaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactct 12195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 12439971 - 12440170
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtatttg 305  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||   |||||| |  |   ||  |||| |||||||| ||||||||    
T  12439971 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtcc---agagcattatggtttgtgggtatttg 12440067  T
Q  306 gagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactct 405  Q
    || ||| ||| ||| |||||  || | ||  || ||||   |||||||||||||||| ||||||||||||||||   || || ||||||||||| |||||    
T  12440068 gaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactct 12440167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 12200561 - 12200760
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtatttg 305  Q
    ||||||||||||||||||||||||||||||||| | ||||| | ||||||| ||||| |  |||||   |  ||| |  ||| |||||||| ||||||||    
T  12200561 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccat--ggtctta-tgtattatggtttgtgggtatttg 12200657  T
Q  306 gagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactct 405  Q
    |||||| ||||||| |||||  || | ||  || |||| | ||  |||||||||||| |||||||  ||||||| ||| |||||||||||| || |||||    
T  12200658 gagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactct 12200757  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 12444989 - 12445188
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccatagagcattagtacattctggtttgtcggtatttg 305  Q
    ||||||||||||||||||||||||||||||||| | ||||| | ||||||| ||||| |  |||||   |  ||| |  ||| |||||||| ||||||||    
T  12444989 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccat--ggtctta-tgtattatggtttgtgggtatttg 12445085  T
Q  306 gagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactct 405  Q
    |||||| ||||||| |||||  || | ||  || |||| | ||  |||||||||||| |||||||  ||||||| ||| |||||||||||| || |||||    
T  12445086 gagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactct 12445185  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 4031628 - 4031578
Alignment:
Q  349 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaa 399  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4031628 agttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaa 4031578  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 412
Target Start/End: Complemental strand, 47451662 - 47451539
Alignment:
Q  289 tggtttgtcggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 388  Q
    |||||||| |||||||||||||| ||||||| || ||| |  ||||  |  |||||||| |||||||||||||||||||||||||||||||||  |||||    
T  47451662 tggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 47451563  T
Q  389 tcttggactaaaactcttgttctt 412  Q
    ||||||   || ||||||||||||    
T  47451562 tcttgggaaaagactcttgttctt 47451539  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 11015195 - 11015134
Alignment:
Q  347 acagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 408  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  11015195 acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  351 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 408  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 11005637 - 11005571
Alignment:
Q  342 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 408  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  11005637 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 48884176 - 48884246
Alignment:
Q  342 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 30130967 - 30130916
Alignment:
Q  346 tacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggact 397  Q
    ||||||| | |||||||||||| ||||||||| ||||||||| |||||||||    
T  30130967 tacagttaagatatgggtgatgcaagaatacacagtgcattcatcttggact 30130916  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 30165853 - 30165914
Alignment:
Q  346 tacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttg 407  Q
    ||||||| | |||||||||||| ||||||||  ||||||||| ||||||||||  |||||||    
T  30165853 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactacgactcttg 30165914  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 21016174 - 21016237
Alignment:
Q  343 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactctt 406  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  21016174 tgatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  354 aaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||| |  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 21979473 - 21979423
Alignment:
Q  206 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttcca 256  Q
    |||||||||||||||||||| ||||||||| | |||||||| |||||||||    
T  21979473 attgttgcctttgatttaatagaaaggaaactttttgagatccctcttcca 21979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  357 tatgggtgatgaaagaatacaaagtgcattcgtcttggact 397  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 24310570 - 24310641
Alignment:
Q  344 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttcttgat 415  Q
    |||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtttttgat 24310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  356 atatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttct 411  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 24416132 - 24416199
Alignment:
Q  344 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttct 411  Q
    |||| |||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 24323139 - 24323195
Alignment:
Q  359 tgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttcttgat 415  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttcttgat 24323195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 24340765 - 24340833
Alignment:
Q  344 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    ||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||    
T  24340765 gatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttctt 24340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 24353130 - 24353198
Alignment:
Q  344 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    ||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||    
T  24353130 gatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttctt 24353198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 24369800 - 24369863
Alignment:
Q  349 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 412  Q
    |||||| |||||||||||| || | ||   ||||||||| ||||||||||||||||||||||||    
T  24369800 agttgatatatgggtgatggaatagtatggagtgcattcatcttggactaaaactcttgttctt 24369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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