View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_9 (Length: 409)
Name: NF3271_low_9
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 28699333 - 28699390
Alignment:
| Q |
58 |
tctggaatcttggtcttgttattctgtactatttcctatataactatttgaatgtgtt |
115 |
Q |
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| T |
28699333 |
tctggaatcttggtcttgttattctgtactatttcctatatagctatttgaatgtgtt |
28699390 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 34925171 - 34925139
Alignment:
| Q |
70 |
gtcttgttattctgtactatttcctatataact |
102 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34925171 |
gtcttgttattctgtactatttcctatataact |
34925139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 34929536 - 34929503
Alignment:
| Q |
70 |
gtcttgttattctgtactatttcctatataacta |
103 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
34929536 |
gtcttgttattctgtactatttcctatatgacta |
34929503 |
T |
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