View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3272-Insertion-2 (Length: 718)

Name: NF3272-Insertion-2
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3272-Insertion-2
NF3272-Insertion-2
[»] chr1 (8 HSPs)
chr1 (7-480)||(32250895-32251368)
chr1 (479-716)||(32251424-32251661)
chr1 (7-205)||(32245148-32245353)
chr1 (479-718)||(32246341-32246574)
chr1 (329-480)||(32246137-32246285)
chr1 (249-300)||(32245445-32245496)
chr1 (293-324)||(32256441-32256472)
chr1 (293-327)||(32246032-32246066)
[»] chr8 (6 HSPs)
chr8 (517-593)||(10191230-10191306)
chr8 (529-593)||(27895517-27895581)
chr8 (529-593)||(27907756-27907820)
chr8 (529-593)||(27954175-27954239)
chr8 (531-593)||(27970870-27970932)
chr8 (531-593)||(28028139-28028201)
[»] chr3 (2 HSPs)
chr3 (529-576)||(50977332-50977379)
chr3 (529-576)||(51080464-51080511)


Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Original strand, 32250895 - 32251368
Alignment:
Q  7 acattcaactcatgacttttaagttttacctaaaattcactttcaccaccacaaaaccaaacatacttgaaaatactggactcaccggatgtacatagat 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32250895 acattcaactcatgacttttaagttttaactaaaattcactttcaccaccacaaaatcaaacatacttgaaaatactggactcaccggatgtacatagat 32250994  T
Q  107 gtataaaataaaattcaaaaactcaatttctaacataaagacctttaaaaacacatgataatccaaaatttccatgtcaacatttttgtgtcttttctgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32250995 gtataaaataaaattcaaaaactcaatttctaacataaagacctttaaaaacacatgataatccaaaatttccatgtctacatttttgtgtcttttctgt 32251094  T
Q  207 tggtactaataatcttgcagagcttctacgcgtagagtttgctgcttctcctgttgttttaatctatttgcaactgtatcaggattaatctcattgcagg 306  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  32251095 tggtactaataatctagcagagcttctacgtgtagtgtttgctgcttctcctgttgtattaatctatttgcaactgtatcaggattaatctcatagcagg 32251194  T
Q  307 ggtagcctctcgtttcaaaattgagaacaagccaaaagttcgaagactactatttcgaaaaagattttcaaaaatcaacgtctagggttattcgaaagtc 406  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251195 ggtagcctctcgtttcaaaattgagaataagccaaaagttcgaagactactatttcgaaaaagattttcaaaaatcaacgtctagggttattcgaaagtc 32251294  T
Q  407 caagttacacaacttctataaacttacatataaagtgtgttcaagaagtcttttgagcaatcagttatatgctt 480  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32251295 caagttacacaacttctataaacttacatatcaagtgtgttcaagaagtcttttgagcaatcagttatatgctt 32251368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 479 - 716
Target Start/End: Original strand, 32251424 - 32251661
Alignment:
Q  479 ttagaagacacatgacatcgacatgtgttggagattaatttatttcttagtctataaattgtataatcaaactctatgtaaatgagttcatttctgtttc 578  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32251424 ttagaagacacatgacatcgacatgtgttagagattaatttatttcttagtctataaattgtataatcaaactccatgtaaatgagttcatttctgtttc 32251523  T
Q  579 acaaaactatgcctaacagataaggcatccgccctcacgggataatttcttactgacaatattaaatcagtgatgtatgaaacaatcaaacctatctata 678  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251524 acaaagctatgcctaacagataaggcatccgccctcacgggataacttcttcctgacaatattaaatcagtgatgtatgaaacaatcaaacctatctata 32251623  T
Q  679 ttaatatatttttctttttgtatacttggtgcctttac 716  Q
    |||||||||||||||||||| |||||||||||||||||    
T  32251624 ttaatatatttttctttttgcatacttggtgcctttac 32251661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 32245148 - 32245353
Alignment:
Q  7 acattcaactcatgacttttaagttttacctaaaattcactttcaccaccacaaaaccaaacatacttgaaaatac----tggactcaccggatgtacat 102  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| || ||||||||    |||||||||| |||||||||    
T  32245148 acattcaactcatgactttaaagttttaactaaaattcattttcaccaccacaaaaccaaacatgctagaaaatactgggtggactcaccagatgtacat 32245247  T
Q  103 agatgtataaaataaaattcaaaaactcaatttctaacata--aagacctttaaaaacacatgataatcc-aaaatttccatgtcaacatttttgtgtct 199  Q
    |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  32245248 agatgtataaaataaaattcaaaaactcaatttctaacatacctttacctttaaaaacacatgataatccaaaaatttccatgtctacatttttgtgtcc 32245347  T
Q  200 tttctg 205  Q
    ||||||    
T  32245348 tttctg 32245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 479 - 718
Target Start/End: Original strand, 32246341 - 32246574
Alignment:
Q  479 ttagaagacacatgacatcgacatgtgttggagattaatttatttcttagtctataaattgtataatcaaactctatgtaaatgagttcatttctgtttc 578  Q
    ||||||||||| ||||||| |||  ||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | || |    
T  32246341 ttagaagacacgtgacatccacacatgttacagattaatttatttcttagtccataaattgtataatcaaactccatgtaaatgagttcatttatattcc 32246440  T
Q  579 acaaaactatgcctaacagataaggcatccgccctcacgggataatttcttactgacaatattaaatcagtgatgtatgaaacaatcaaacctatctata 678  Q
    |||| |||||| |||| ||| |  ||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||      ||    
T  32246441 acaacactatgtctaatagacagcgcatctgccctcacgggataacttcttactgacaatattgaatcattgatgtatgaaacattcaaacc------ta 32246534  T
Q  679 ttaatatatttttctttttgtatacttggtgcctttacca 718  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  32246535 ttaatatatttttctttttgcatacttagtgcctttacca 32246574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 329 - 480
Target Start/End: Original strand, 32246137 - 32246285
Alignment:
Q  329 gagaacaagccaaaagttcgaagactactatttcgaaaaagattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaa 428  Q
    |||||||||||| ||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32246137 gagaacaagccagaagttcgaagactgctatttcgaa---gattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaa 32246233  T
Q  429 cttacatataaagtgtgttcaagaagtcttttgagcaatcagttatatgctt 480  Q
    ||| ||||| || | |||||| ||||||||||||||||||||||||||||||    
T  32246234 ctttcatatcaactatgttcaggaagtcttttgagcaatcagttatatgctt 32246285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 32245445 - 32245496
Alignment:
Q  249 tgcttctcctgttgttttaatctatttgcaactgtatcaggattaatctcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  32245445 tgcttctcctgttgttttaatctatttgcaactgtatcaggactaaactcat 32245496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 324
Target Start/End: Original strand, 32256441 - 32256472
Alignment:
Q  293 aatctcattgcaggggtagcctctcgtttcaa 324  Q
    ||||||||||||||||||||||||||||||||    
T  32256441 aatctcattgcaggggtagcctctcgtttcaa 32256472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 32246032 - 32246066
Alignment:
Q  293 aatctcattgcaggggtagcctctcgtttcaaaat 327  Q
    ||||||||||||||||||||||||||||| |||||    
T  32246032 aatctcattgcaggggtagcctctcgtttgaaaat 32246066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 593
Target Start/End: Complemental strand, 10191306 - 10191230
Alignment:
Q  517 tttatttcttagtctataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||| |||||||||||||| || |||||||||| ||| ||| ||||||||||  |||||| ||||||| |||||    
T  10191306 tttatttgttagtctataaattataaaatcaaactcgatgcaaaagagttcattttcgtttcataaaactaagccta 10191230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 593
Target Start/End: Original strand, 27895517 - 27895581
Alignment:
Q  529 tctataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||||||||| | |||||||| ||| |||||||||| ||||| ||  |||||||||||||||    
T  27895517 tctataaattgtaaactcaaactccatgcaaatgagttcgtttctattcgacaaaactatgccta 27895581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 593
Target Start/End: Original strand, 27907756 - 27907820
Alignment:
Q  529 tctataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||||||||| | |||||||| ||| |||||||||| ||||| ||  |||||||||||||||    
T  27907756 tctataaattgtaaactcaaactccatgcaaatgagttcgtttctattcgacaaaactatgccta 27907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 593
Target Start/End: Original strand, 27954175 - 27954239
Alignment:
Q  529 tctataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||||||||| | |||||||| ||| |||||||||| ||||| ||  |||||||||||||||    
T  27954175 tctataaattgtaaactcaaactccatgcaaatgagttcgtttctattcgacaaaactatgccta 27954239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 27970870 - 27970932
Alignment:
Q  531 tataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||||||| | |||||||| ||| |||||||||| ||||||||  | |||||||||||||    
T  27970870 tataaattgtaaactcaaactccatgcaaatgagttcgtttctgttcgataaaactatgccta 27970932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 28028139 - 28028201
Alignment:
Q  531 tataaattgtataatcaaactctatgtaaatgagttcatttctgtttcacaaaactatgccta 593  Q
    ||||||||||| | |||||||| ||| |||||||||| ||||||||  | |||||||||||||    
T  28028139 tataaattgtaaactcaaactccatgcaaatgagttcgtttctgttcgataaaactatgccta 28028201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Original strand, 50977332 - 50977379
Alignment:
Q  529 tctataaattgtataatcaaactctatgtaaatgagttcatttctgtt 576  Q
    |||||||||||||  ||||||||||||| ||||||||| |||||||||    
T  50977332 tctataaattgtaagatcaaactctatgcaaatgagtttatttctgtt 50977379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Original strand, 51080464 - 51080511
Alignment:
Q  529 tctataaattgtataatcaaactctatgtaaatgagttcatttctgtt 576  Q
    |||||||||||||  ||||||||||||| ||||||||| |||||||||    
T  51080464 tctataaattgtaagatcaaactctatgcaaatgagtttatttctgtt 51080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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