View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272-Insertion-3 (Length: 403)
Name: NF3272-Insertion-3
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 29192085 - 29192478
Alignment:
| Q |
8 |
atatttgacaggaagatcactatgttccgaagctgaattttagtgttttcgaagnnnnnnnnn-atgatttgaatcagaagtgattatgttgaggagaac |
106 |
Q |
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| T |
29192085 |
atatttgacaggaagatcactatgttccgaagctgaattttagtgttttcgaagttttttttatatgatttgaatcagaagtgattatgttgaggagaac |
29192184 |
T |
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| Q |
107 |
gttattttgg-aatttgaattgtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggat |
205 |
Q |
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| T |
29192185 |
gttattttgggaatttgaattgtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggat |
29192284 |
T |
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| Q |
206 |
ttcctgctaggggaattagaactgtgcttgttagttacagagattctcgaggccaggtcagannnnnnnnnnnnnnnactacatgattattttgcttaag |
305 |
Q |
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| T |
29192285 |
ttcctgctaggggaattagaactgtgcttgttagttacagagattctcgaggccaggtcaga-----ttttttttttactacatgattattttgcttaag |
29192379 |
T |
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| Q |
306 |
atgttgttagttgatatattcaaagtgatttacaccgattaaataatcagatt-ggtcgtaaattagttcttgatgtacatttcatcaatttggccgta |
403 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29192380 |
atgttgttaattgatatattcaaagtgatttacaccgattaaataatcagattagttcgtaaattagttcttgatgtacatttcattaatttggccgta |
29192478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 10668456 - 10668359
Alignment:
| Q |
111 |
ttttggaatttgaattgtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttc |
208 |
Q |
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| T |
10668456 |
ttttggaatttgatttgtgaaatttgttgtgtaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtattgtgtgatcctggatttc |
10668359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 33633827 - 33633718
Alignment:
| Q |
142 |
caggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattagaactgtgcttgttagtt |
241 |
Q |
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| T |
33633827 |
caggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattagaactgtgcttgttagtt |
33633728 |
T |
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| Q |
242 |
acagagattc |
251 |
Q |
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| T |
33633727 |
acagagattc |
33633718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 33633671 - 33633622
Alignment:
| Q |
309 |
ttgttagttgatatattcaaagtgatttacaccgattaaataatcagatt |
358 |
Q |
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| T |
33633671 |
ttgttaattgatatatccaaagtgattttcaccgattaaataatcagatt |
33633622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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