View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3272-Insertion-4 (Length: 382)
Name: NF3272-Insertion-4
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272-Insertion-4 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 6448544 - 6448170
Alignment:
| Q |
8 |
tattttatctcaacttcaagtggctagaactgctttggtaatattaaggagtaaaatgcacttaaactttgtcgagaggtttcttgacaacgagttaatc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6448544 |
tattttatctcaacctcaagtggctagaactgctttggtaatattaaggagtaaaatgctcttaaaccttgtcgagaggtttcttgacaacgagttaatc |
6448445 |
T |
|
| Q |
108 |
aagactcagtgatccttaatgtagatggaagtgcaccgacgaatctagagtttgcaggctttggttgtctctttagaaggcaagatggaagcttcgtatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6448444 |
aagactcagtgatccttaatgtagatggaagtgcaccgacgaatctagagtttgcaggctttggttgtctctttagaaggcaagatggaagcttcatatt |
6448345 |
T |
|
| Q |
208 |
tgggctccacgggagtgttggttggtctaatatccttcatgctgagatttagaatttgtgttacaaagcggaaataaagtcttttgtatgttactatgac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6448344 |
tgggctccacgggagtgttggttggtctaatatccttcatgctgagatttagaatttgtgttacaaagcggaaataaagtcttttgtatgttactatgac |
6448245 |
T |
|
| Q |
308 |
tatttgcatgtattctaatttgttggagcgtataaaggtttatctgagtatggattgtatgatttctcttcatga |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6448244 |
tatttgcatgtattctaatttgttggagcgtataaaggtttatctgagtatggattgtatgatttctcttgatga |
6448170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 29907670 - 29907532
Alignment:
| Q |
118 |
gatccttaatgtagatggaagtgcaccgacgaatctagagtttg-caggctttggttgtctctttagaaggcaagatggaagcttcgtatttgggctcca |
216 |
Q |
| |
|
||||||||||||||| || ||||||| || |||||| |||||| | |||||| || ||||| ||||||| || ||||| |||||| ||||| || |||| |
|
|
| T |
29907670 |
gatccttaatgtagacgggagtgcactaacaaatcta-agtttggctggcttttgtggtctcattagaagacatgatgggagcttcatatttaggttcca |
29907572 |
T |
|
| Q |
217 |
cgggagtgttggttggtctaatatccttcatgctgagatt |
256 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |
|
|
| T |
29907571 |
tatgagtgttggtctgtttaatatccttcatgctgagatt |
29907532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 6087 - 6310
Alignment:
| Q |
31 |
ctagaactgctttg-gtaatattaaggagtaaaatgcacttaaactttgtcgagaggtttcttgacaacgagttaatcaagactcagtgatccttaatgt |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| |||||| || ||| |||| |||||| | |
|
|
| T |
6087 |
ctagaactgctttcagtaatattaaggagtaaaatgctcttaaaccttgtcgagagatttctcagcaacgaggtaatcatgattcaatgattcttaatat |
6186 |
T |
|
| Q |
130 |
agatggaagtgcaccgacgaatctagagtttgcaggctt----tggttgtctctttagaaggcaagatggaagcttcgtatttgggctccacgggagtgt |
225 |
Q |
| |
|
|||||| ||||||| ||| | |||||| | |||| || | |||||||||| || |||||||||||||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
6187 |
agatgggagtgcacagacaattctagattctgcaagcatgatatggttgtctcgttcgaaggcaagatggaagtttcatatttgggttccacggaagtgt |
6286 |
T |
|
| Q |
226 |
tggttggtctaatatccttcatgc |
249 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
6287 |
tcgttggtctaatatccttcatgc |
6310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 30881119 - 30881244
Alignment:
| Q |
8 |
tattttatctcaacttcaagtggctagaactgctttgg-taatattaaggagtaaaatgcacttaaactttgtcgagaggtttcttgacaacgagttaat |
106 |
Q |
| |
|
|||| |||||||| || ||||||||| |||| ||| | |||||||| ||| | ||||| ||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
30881119 |
tattgtatctcaattttaagtggctataactatttttgataatattattgagcagaatgctcttaaaccttgtcgagaggtctcttgacaacgaggtaat |
30881218 |
T |
|
| Q |
107 |
caagactcagtgatccttaatgtaga |
132 |
Q |
| |
|
|| ||| | |||||||||||||||| |
|
|
| T |
30881219 |
catgacacgatgatccttaatgtaga |
30881244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 45486497 - 45486710
Alignment:
| Q |
41 |
tttggtaatattaaggagtaaaatgcacttaaactttgtcgagaggtttcttgacaacgagttaatcaagactcagtgatccttaatgtagatggaagtg |
140 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||| |||||||||||| | || ||||||| ||| || || || ||||| |||||||||||| ||| |
|
|
| T |
45486497 |
tttggtaatattagggagcaaaatgaacttaaaacttgtcgagaggtatgtttgcaacgaggtaagcatgatacactgatcgttaatgtagatgagggtg |
45486596 |
T |
|
| Q |
141 |
caccgacgaatctagagtttgcaggctttggttgtctctttagaaggcaagatggaagcttcgtatttgggctccacgggagtgttggttggtctaatat |
240 |
Q |
| |
|
||| || ||| || || || |||||||| ||||| ||||| ||||| |||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
45486597 |
cactaacatatccaggcttggctagctttggtggtctcattagacacattgatgggagcttcatattttggttccatgggagtgttggttggtctaatat |
45486696 |
T |
|
| Q |
241 |
ccttcatgctgaga |
254 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
45486697 |
ccttcaagctgaga |
45486710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University