View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272-Insertion-6 (Length: 80)
Name: NF3272-Insertion-6
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 8410409 - 8410338
Alignment:
| Q |
9 |
aaacttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttg |
80 |
Q |
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| T |
8410409 |
aaacttccattccctaaatcttcgctaacacggccttcccaccacctgtgtttccggaacgcctccactttg |
8410338 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 8042221 - 8042289
Alignment:
| Q |
8 |
gaaacttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccac |
76 |
Q |
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| T |
8042221 |
gaaacttccattccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccac |
8042289 |
T |
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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 9139848 - 9139912
Alignment:
| Q |
12 |
cttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccac |
76 |
Q |
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| T |
9139848 |
cttccattccctaaatctgcgctaacgcggccttcccaccaccggtgttttcggaatgcctccac |
9139912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 8036776 - 8036814
Alignment:
| Q |
42 |
ccttcccaccacctgtgtttccggaacgcctccactttg |
80 |
Q |
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| T |
8036776 |
ccttcccaccacctgtgtttccggaacgcctccactttg |
8036814 |
T |
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