View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_high_12 (Length: 235)
Name: NF3272_high_12
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 41604693 - 41604881
Alignment:
| Q |
33 |
cgtcactatcagagtctttaaatggagtcggctaaatttgtttgattgctcaaaattgttgctatgtttattttcaaaataaaaaaggacacgatatgtc |
132 |
Q |
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| T |
41604693 |
cgtctctatccgagtctttaaatggagtcggctaaatttgtttgattgctcaaaattgttgctatgtttattttcaaaataaaaaaggacacgatatgtc |
41604792 |
T |
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| Q |
133 |
atgtatcactcgtatggaggagac--agacataatataaaaacaacggaatttgttttattttgctaaaacaagaaaggatcctactcc |
219 |
Q |
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| T |
41604793 |
atgtatcactcgtatggaggagacaaagacataatataaaaacaacggaatttgttttattttgctaaaacaagaaaggatcctactcc |
41604881 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 36937768 - 36937728
Alignment:
| Q |
179 |
aatttgttttattttgctaaaacaagaaaggatcctactcc |
219 |
Q |
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| T |
36937768 |
aatttgttttattttactataacaagaaaggatcctactcc |
36937728 |
T |
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