View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_high_15 (Length: 208)
Name: NF3272_high_15
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 32250900 - 32250722
Alignment:
| Q |
19 |
gaatgtacattggtttctgtttatatatattt--acataaatgtgttcatcaaaaaatttaagttaaaaatcttataaagaggcaaaacatcttattaca |
116 |
Q |
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| T |
32250900 |
gaatgtacattggtttctgtttatatatatttttacataaatgtgttcatcaaaaaatttaagttaaaaatcttataaagaggcaaaacatctaattaca |
32250801 |
T |
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| Q |
117 |
tatttgagttagaatttattttatagaacacttaaatatatcaagcaattttaattcatgtgtctagaatattcttgga |
195 |
Q |
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| T |
32250800 |
tatttgagttagaatttattttatagaacacttaaatatatcaggcaattttaattcatgtgtctagaatatttttgga |
32250722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 32245153 - 32244977
Alignment:
| Q |
19 |
gaatgtacattggtttctgtttatatatatttacataaatgtgttcatcaaaaaatttaagttaaaaatcttataaagaggcaaaacatcttattacata |
118 |
Q |
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|||||||||||||| | |||||||||| ||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32245153 |
gaatgtacattggtctatgtttatatacatttacataaatgtgttcaacaataatttgaagttaaaaatcttataaagaggcaaaacatctaattacata |
32245054 |
T |
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| Q |
119 |
tttgagttagaatttattttatagaacacttaaatatatcaagcaattttaattcatgtgtctagaatattcttgga |
195 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
32245053 |
tttgagctagaatttattttatagaacgcttaaatatatcaagcaattttaatttatgtgtctagaatatttttgga |
32244977 |
T |
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