View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_high_2 (Length: 551)
Name: NF3272_high_2
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 30897838 - 30898360
Alignment:
| Q |
18 |
catcttacaagtataatttgctgtcctgttgtagattgtggagaagtttacacatggggatggaaggaatgtattccttctgggaaggtattcggtgaaa |
117 |
Q |
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| T |
30897838 |
catcttacaagtataatttgctgtcctgttgtagattgtggagaagtttacacatggggatggaaggaatgtattccttctgggaaggtattcggtgaaa |
30897937 |
T |
|
| Q |
118 |
cttcgcaaggggtaagtcctgaaaaagatgcacaaggaaagcagagttcattcttgacagaacaaggtatgtctaacctcttttcaatggacatttgtct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897938 |
cttcgcaaggggtaagtcctgaaaaagatgcacaaggaaagccgagttcattcttgacagaacaaggtatgtctaacctcttttcaatggacatttgtct |
30898037 |
T |
|
| Q |
218 |
acagatacctgcccctcccaggaggtggtctaagcttagccaaggtctacgaaaaggattctggagaagggaactgatttaagatacaaagttcgaaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898038 |
acagatacctgcccctcccaggaggtggtctaagcttagccaaggtctacgaaaaggattctggagaagggaactgatttaagatacaaagttcgaaacc |
30898137 |
T |
|
| Q |
318 |
ccaaaaagaaagaagaaaagagttttgcactttatgatgagcaaagaaggatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898138 |
ccaaaaagaaagaagaaaagagttttgcactttatgatgagcaaagaaggatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtg |
30898237 |
T |
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| Q |
418 |
agctctcgttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcagcaaagcaagcggctc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30898238 |
agctctcgttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcggcaaagcaagcggctc |
30898337 |
T |
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| Q |
518 |
aaacctcgtcatctggtgatgat |
540 |
Q |
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||||||||||||||||||||||| |
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| T |
30898338 |
aaacctcgtcatctggtgatgat |
30898360 |
T |
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