View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_high_5 (Length: 373)
Name: NF3272_high_5
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 36744894 - 36745256
Alignment:
| Q |
11 |
caaaggaacacttggagattaacacggatggactcacagtagaaaaggtaaatatatgtgtattgtttcaaagaaaatcacacaagacattatatatgtc |
110 |
Q |
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| T |
36744894 |
caaaagaacacttggagattaacacggatggactcacagtagaaaaggtaaatatatgtgtattgtttcaaagaaaatcacacaagacattatatatgtc |
36744993 |
T |
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| Q |
111 |
ttcattgatttatcctcttgatgttgattgaatttgtattcatttacttgtggaacaggcaattcaagacgagaggctattcattttggattaccatgac |
210 |
Q |
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| T |
36744994 |
ttcattgatttatcctcttgatgttgattgaatttgtattcatttacttgtggaacaggcaattcaagacgagaggctattcattttggattaccatgac |
36745093 |
T |
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| Q |
211 |
gcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccat |
310 |
Q |
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| T |
36745094 |
gcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccactaggacaatcctattcttgaaagatgatgggactttaaagccat |
36745193 |
T |
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| Q |
311 |
tggccatcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtaaagtgc |
373 |
Q |
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| T |
36745194 |
tggccatcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtaaagtgc |
36745256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 344
Target Start/End: Original strand, 9605114 - 9605267
Alignment:
| Q |
188 |
tattcattttggattaccatgacgcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccactaggacaatccttttcttgaa |
287 |
Q |
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| T |
9605114 |
tattcatcttagattatcatgatgcattcatgccatttttggagaagataaacaaaa--atgccaaag-cttatgcaactaggacaatccttttcttaaa |
9605210 |
T |
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| Q |
288 |
agatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatgg |
344 |
Q |
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| T |
9605211 |
agatgatggaactttgaagccagtggccatagaattgagtttaccacatccaaatgg |
9605267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 6457159 - 6457074
Alignment:
| Q |
251 |
caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacac |
336 |
Q |
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| T |
6457159 |
caaaggcttatgccacaagaacaatcttgttcttgaaagatgatgggactttgaagccaatagcaattgaattaagtttgccacac |
6457074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 6363258 - 6363179
Alignment:
| Q |
259 |
tatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacaccc |
338 |
Q |
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| T |
6363258 |
tatgctactagaaccattcttttcttgcaagatgatggaactttgaagccattggccattgaactaagtaggccacaccc |
6363179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 6450968 - 6450889
Alignment:
| Q |
257 |
cttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacac |
336 |
Q |
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| T |
6450968 |
cttatgctacaaggacaatcttgtttttgcaagatgatgggactttgaagccattagccatcgaattaagcttgccacac |
6450889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 7459162 - 7459075
Alignment:
| Q |
251 |
caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacaccc |
338 |
Q |
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| T |
7459162 |
caaagtcctatgcaactagaaccattcttttcttgcaaaatgatggaactttgaagccattggccattgaactaagtaggccacaccc |
7459075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 6370093 - 6370044
Alignment:
| Q |
286 |
aaagatgatgggactttaaagccattggccatcgaactaagtttgccaca |
335 |
Q |
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| T |
6370093 |
aaagatgatggaactttgaatccattggccattgagctaagtttgccaca |
6370044 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 42688650 - 42688737
Alignment:
| Q |
257 |
cttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatgg |
344 |
Q |
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| T |
42688650 |
cttatgctactaggacaatccttttcctaaaagaagatggaaatttaaagccagtggcgattgaattaagtttgccacatcctgatgg |
42688737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 46710362 - 46710278
Alignment:
| Q |
251 |
caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccaca |
335 |
Q |
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| T |
46710362 |
caaagacttatgctagtaggacaattctttttctgcaacaaaatgggactttgaagccattggccattgaattgagtttgccaca |
46710278 |
T |
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