View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_high_7 (Length: 358)
Name: NF3272_high_7
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 42532400 - 42532614
Alignment:
| Q |
1 |
tagtctcaaatttcactacacctgtgttactgtgcacttgactttaacctcatgtgtcatttgaacaaaaaacgtcctaaactacaatccactacacacc |
100 |
Q |
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| T |
42532400 |
tagtctcaaaattcactacacctgtgttactgtgtacttgactttaacctcatgtgtcatttgaacaaaaaacgtcctaaactacaatccactacacacc |
42532499 |
T |
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| Q |
101 |
aggacatactagactagataattcatatcatcactattcattcaacagtagtcatatcatatatttatacaaaattattatgattatttgttttcccttt |
200 |
Q |
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| T |
42532500 |
aggacatactagactagataattcatatcatcactattcattcaacagtagtcatatcatatatttatacaaaattattatgattatttgttttcccttt |
42532599 |
T |
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| Q |
201 |
attttactatcatca |
215 |
Q |
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||||||||||||||| |
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| T |
42532600 |
attttactatcatca |
42532614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 42532692 - 42532739
Alignment:
| Q |
293 |
acacccttcgctccactttccactttag--atcttcaaagttagtgaa |
338 |
Q |
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| T |
42532692 |
acacccttccctccactttccactttagatatcttcaaagttagtgaa |
42532739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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