View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3272_high_8 (Length: 337)

Name: NF3272_high_8
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3272_high_8
NF3272_high_8
[»] scaffold1744 (1 HSPs)
scaffold1744 (29-318)||(951-1240)
[»] chr6 (5 HSPs)
chr6 (176-250)||(14858705-14858780)
chr6 (176-250)||(14860728-14860803)
chr6 (177-250)||(18675954-18676028)
chr6 (212-242)||(24172951-24172981)
chr6 (213-249)||(12351545-12351581)
[»] scaffold0303 (1 HSPs)
scaffold0303 (213-262)||(20521-20572)
[»] chr7 (2 HSPs)
chr7 (217-249)||(8595450-8595482)
chr7 (212-250)||(18069964-18070002)
[»] chr5 (1 HSPs)
chr5 (213-249)||(14405406-14405442)
[»] chr3 (2 HSPs)
chr3 (213-262)||(5027733-5027784)
chr3 (213-249)||(39924893-39924929)
[»] scaffold0097 (1 HSPs)
scaffold0097 (215-262)||(31952-32001)
[»] chr2 (2 HSPs)
chr2 (215-262)||(20728123-20728172)
chr2 (213-267)||(24779549-24779605)
[»] scaffold0882 (1 HSPs)
scaffold0882 (213-250)||(1082-1119)
[»] scaffold0766 (1 HSPs)
scaffold0766 (213-250)||(2284-2321)
[»] scaffold0031 (2 HSPs)
scaffold0031 (141-201)||(89877-89939)
scaffold0031 (213-250)||(89954-89991)
[»] chr8 (1 HSPs)
chr8 (213-249)||(37785822-37785858)


Alignment Details
Target: scaffold1744 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 318
Target Start/End: Original strand, 951 - 1240
Alignment:
Q  29 tattattcttattatatgatgccatatacaatgaaataatcgatatggccaggataagaataacactagcaattgttaatgcatgctaaacattattttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  951 tattattcttattatatgatgccatatacaatgaaataatcgatatggccaggataagaataacactagcaattgttaatgcatgctaaacattattttt 1050  T
Q  129 atgttaaaagatttatgcagttttcaaaataaattatatttcatgcaaaaaatattttcatgtaaaatcactttagnnnnnnntattgtgagtgtgtgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||    
T  1051 atgttaaaagatttatgcagttttcaaaataaattatatttcatgcaaaaaatattttcatgtaaaatcactttcgaaaaagatattgtgagtgtgtgat 1150  T
Q  229 ttattttaatgagagctttttactatttacataaggttcctagaaagaaatattcttctagtccatagcttgaataatttagatcccttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1151 ttattttaatgagagctttttactatttacataaggttcctagaaagaaatattcttctagtccatagcttgaataatttagatcccttt 1240  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 14858780 - 14858705
Alignment:
Q  176 aaaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    ||||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  14858780 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 14858705  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 14860803 - 14860728
Alignment:
Q  176 aaaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    ||||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  14860803 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 14860728  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 18676028 - 18675954
Alignment:
Q  177 aaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    |||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  18676028 aaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 18675954  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 24172981 - 24172951
Alignment:
Q  212 tattgtgagtgtgtgatttattttaatgaga 242  Q
    |||||||||||||||||||||||||||||||    
T  24172981 tattgtgagtgtgtgatttattttaatgaga 24172951  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 12351581 - 12351545
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttt 249  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12351581 attgtgaatgtgtgatttattttcatgagagcttttt 12351545  T

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Target: scaffold0303 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 20572 - 20521
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 262  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  20572 attgtgagtgtgtgatttattttcatgagagcttttggtactacttacataa 20521  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 8595450 - 8595482
Alignment:
Q  217 tgagtgtgtgatttattttaatgagagcttttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  8595450 tgagtgtgtgatttattttaatgagagcttttt 8595482  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 18069964 - 18070002
Alignment:
Q  212 tattgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  18069964 tattgtgagtatgtgatttattttcatgagagcttttta 18070002  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 14405406 - 14405442
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttt 249  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14405406 attgtgagtgtgtgatttattttaatgagaacttttt 14405442  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 5027733 - 5027784
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 262  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  5027733 attgtgagtgtgtgatttattttcatgagagcttttggtactacttacataa 5027784  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 39924929 - 39924893
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttt 249  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39924929 attgtgagtgtgtgatttattttaatgagaacttttt 39924893  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 31952 - 32001
Alignment:
Q  215 tgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 262  Q
    |||||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  31952 tgtgagtgtgtgatgtattttcatgagagctttttctactatttacataa 32001  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 20728123 - 20728172
Alignment:
Q  215 tgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 262  Q
    |||||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  20728123 tgtgagtgtgtgatgtattttcatgagagctttttctactatttacataa 20728172  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 24779605 - 24779549
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataaggttc 267  Q
    |||| |||||||||||||||||| ||||||||||||  ||||| |||||||| ||||    
T  24779605 attgcgagtgtgtgatttattttcatgagagcttttcctactacttacataaagttc 24779549  T

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Target: scaffold0882 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 1082 - 1119
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    |||||||||||||||||||||||  |||||||||||||    
T  1082 attgtgagtgtgtgatttatttttttgagagcttttta 1119  T

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Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 2321 - 2284
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    |||||||||||||||||||||||  |||||||||||||    
T  2321 attgtgagtgtgtgatttatttttttgagagcttttta 2284  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 89877 - 89939
Alignment:
Q  141 ttatgcagttttcaaaataaattata---tttcatgcaaaaaatattttcatgtaaaatcactt 201  Q
    ||||||||||||  |||||||||||    |||||||||||| ||||||||||||||||||||||    
T  89877 ttatgcagttttggaaataaattatgacctttcatgcaaaa-atattttcatgtaaaatcactt 89939  T

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Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 89954 - 89991
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttta 250  Q
    |||||||||||||||||||||||  |||||||||||||    
T  89954 attgtgagtgtgtgatttattttcttgagagcttttta 89991  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 37785858 - 37785822
Alignment:
Q  213 attgtgagtgtgtgatttattttaatgagagcttttt 249  Q
    |||||| |||||||||||||||||||||||| |||||    
T  37785858 attgtgggtgtgtgatttattttaatgagagtttttt 37785822  T

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