View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3272_high_9 (Length: 299)
Name: NF3272_high_9
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_high_9 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 5839828 - 5839545
Alignment:
| Q |
16 |
ccagtgacactaaacaccgttactttgttcggaaaaattcgtccaaaaattataggagtttacaatgaacctatttcattaacagcatcaaaggaattgg |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5839828 |
ccagtgacactaaacaccattactttgttcggaaaaattggtccaaaaattataggagtttacaatgaacctatttcattaacagcatcaaaggaattgg |
5839729 |
T |
|
| Q |
116 |
gctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagtttgttcactagtccttttatccaatcattgctattgaaatagttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5839728 |
gctaaaagaatccagaaagagtggaagattttagagaacaatttgccaggtgagtttgttcactagtccttttatccaatcattgctattgaaatagtag |
5839629 |
T |
|
| Q |
216 |
atttgcttcctgtcatttcagaagggtcttggcttattttcatgatatgtccttattcaaagctcgtcaatattttttcttctc |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5839628 |
atttggttcctgtcatttcagaagggtcttggcttattttcatgatatgtccttattcaaagctcgtcaatatttttttttctc |
5839545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 33363227 - 33363287
Alignment:
| Q |
112 |
ttgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagttt |
172 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||| | ||||||| ||||||||| |
|
|
| T |
33363227 |
ttgggctaaaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagttt |
33363287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 33369658 - 33369697
Alignment:
| Q |
112 |
ttgggctaaaagaatccagaaagagtggaagattttggag |
151 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33369658 |
ttgggctaaaaaaatccaggaagagtggaagattttggag |
33369697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 52472732 - 52472828
Alignment:
| Q |
75 |
ttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagtt |
171 |
Q |
| |
|
||||||||||| |||||| | ||||||||| | ||||||||||||| |||| ||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
52472732 |
ttacaatgaacttatttcctgaacagcatccagagaattgggctaaagaaatcaagaaagaatggaagattttggagaaggatttgccgggtgagtt |
52472828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 7238640 - 7238590
Alignment:
| Q |
130 |
gaaagagtggaagattttggagaacaatttgccaggtgagtttgttcacta |
180 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
7238640 |
gaaagattggaagattttggagaagaatttgccaggtaagtttgttcacta |
7238590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 41453229 - 41453290
Alignment:
| Q |
112 |
ttgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagtttg |
173 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
41453229 |
ttgggctagaaaaattcagaaagagtggaagattttgaaaaagcatttgccaggtgagtttg |
41453290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 38793381 - 38793277
Alignment:
| Q |
71 |
gagtttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagt |
170 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| |||||||||||| ||||| |||||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
38793381 |
gagttttcaatgaacctatttcctgaacagcatcaagaaaattgggctaaagaaatccggaaagaaagaaagattttggagaaggattagccaggtgaga |
38793282 |
T |
|
| Q |
171 |
ttgtt |
175 |
Q |
| |
|
||||| |
|
|
| T |
38793281 |
ttgtt |
38793277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 7763458 - 7763371
Alignment:
| Q |
83 |
aacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagt |
170 |
Q |
| |
|
|||||||||| | | ||| ||| || |||||||||||||| ||||||| ||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
7763458 |
aacctatttcctgagcagaatccaaagaattgggctaaaaaaatccaggaagagtggaggattttggagaagcatttgccgggtgagt |
7763371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 11719487 - 11719549
Alignment:
| Q |
110 |
aattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagttt |
172 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| | | |||||| ||| ||||| |
|
|
| T |
11719487 |
aattgggctaaagtaatccagaaagagtggaagattttggaggagagtttgccgggttagttt |
11719549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 5470 - 5511
Alignment:
| Q |
112 |
ttgggctaaaagaatccagaaagagtggaagattttggagaa |
153 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5470 |
ttgggctaaaaaaatccaggaagagtggaagattttggagaa |
5511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 17988 - 17947
Alignment:
| Q |
112 |
ttgggctaaaagaatccagaaagagtggaagattttggagaa |
153 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
17988 |
ttgggctaaaaaaatccaggaagagtggaagattttggagaa |
17947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University