View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3272_low_1 (Length: 652)
Name: NF3272_low_1
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3272_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 32250745 - 32250104
Alignment:
| Q |
1 |
tcatgtgtctagaatatttttggatcttacaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250745 |
tcatgtgtctagaatatttttggatcttacaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaa |
32250646 |
T |
|
| Q |
101 |
ttttctagaacttatttgaattcaaataactggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggta |
200 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250645 |
ttctctagaacttagttgaattcaaataactggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggta |
32250546 |
T |
|
| Q |
201 |
annnnnnnnnn-acaaatgcattcaatcaaaccatgtcatataatcatggtactttttataaggcagattttaaaacatttctataaataactatatttg |
299 |
Q |
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| T |
32250545 |
attttcttttttacaaatgcatgcaatcaaaccatgtcatataatcatggtactttt-ataaggtagattttaaaacatttatataaataactatatttg |
32250447 |
T |
|
| Q |
300 |
acgtgatttgattggatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtact |
399 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250446 |
acgcgatttgattggatgcatgagtaacaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtact |
32250347 |
T |
|
| Q |
400 |
ataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtaga |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32250346 |
ataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaatgaataaagtaga |
32250247 |
T |
|
| Q |
500 |
gtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagt |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32250246 |
gtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagt |
32250147 |
T |
|
| Q |
600 |
catgattccatatgtaaagataccaacaaatatacactctgtg |
642 |
Q |
| |
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|| |||||||||||| |||||| |||||||||||| ||||||| |
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| T |
32250146 |
caggattccatatgtgaagatagcaacaaatataccctctgtg |
32250104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 314 - 642
Target Start/End: Complemental strand, 32244723 - 32244395
Alignment:
| Q |
314 |
gatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactat-aagctagaatt |
412 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| | |||||||| || ||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
32244723 |
gatgcatgagtaaaaatgttttacgctta-agttatgctgtttctgttgcgaaggctacagattgataataacaaagagaggtactattaagctagaatt |
32244625 |
T |
|
| Q |
413 |
tctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagt |
512 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32244624 |
tctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagt |
32244525 |
T |
|
| Q |
513 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
612 |
Q |
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| T |
32244524 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
32244425 |
T |
|
| Q |
613 |
gtaaagataccaacaaatatacactctgtg |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
32244424 |
gtaaagataccaacaaatatacactctgtg |
32244395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 32244998 - 32244800
Alignment:
| Q |
3 |
atgtgtctagaatatttttggatcttacaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
32244998 |
atgtgtctagaatatttttggatcttacaaaagggaatccaaatatgcaccaaatgcactgcattgatttaaacatcaatgacaacaatcaacctgaatt |
32244899 |
T |
|
| Q |
103 |
ttctagaacttatttgaattcaaataactggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggtaa |
201 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| |
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| T |
32244898 |
ctctagagcttacttgaattcaaacaactggaaggtaaatactgaactttcagagcataaattttaagagattaagttatatatgcactgatggtgtaa |
32244800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 32255186 - 32255138
Alignment:
| Q |
121 |
ttcaaataactggaaggtaaatattgaactttcagagcataaattttaa |
169 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| ||||||||||| |
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|
| T |
32255186 |
ttcaaatacttgcaaggtaaatattgaactttcagagaataaattttaa |
32255138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 1635030 - 1634996
Alignment:
| Q |
302 |
gtgatttgattggatgcatgagtaaaaatgtttta |
336 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
1635030 |
gtgatttgattggatgcatgtgtaaaaatgtttta |
1634996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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