View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3272_low_7 (Length: 364)

Name: NF3272_low_7
Description: NF3272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3272_low_7
NF3272_low_7
[»] chr4 (29 HSPs)
chr4 (1-345)||(7823217-7823561)
chr4 (1-345)||(7800885-7801229)
chr4 (1-345)||(7813725-7814069)
chr4 (162-230)||(7908665-7908733)
chr4 (1-230)||(7878746-7878969)
chr4 (162-230)||(7790443-7790511)
chr4 (163-230)||(7773456-7773523)
chr4 (162-228)||(7771760-7771826)
chr4 (154-230)||(49043790-49043866)
chr4 (160-230)||(48864398-48864468)
chr4 (162-240)||(48156059-48156137)
chr4 (168-230)||(48853044-48853106)
chr4 (172-230)||(49038518-49038576)
chr4 (177-230)||(48147358-48147411)
chr4 (171-230)||(7786827-7786886)
chr4 (171-230)||(45371713-45371772)
chr4 (175-228)||(7237386-7237439)
chr4 (162-230)||(45384522-45384590)
chr4 (162-230)||(48870923-48870991)
chr4 (162-230)||(48876227-48876295)
chr4 (162-230)||(48886609-48886677)
chr4 (182-230)||(48903318-48903366)
chr4 (154-230)||(49048177-49048253)
chr4 (174-226)||(50666682-50666734)
chr4 (171-230)||(7766005-7766064)
chr4 (174-223)||(37826632-37826681)
chr4 (162-227)||(48863631-48863696)
chr4 (1-135)||(7766133-7766264)
chr4 (1-135)||(7786955-7787086)
[»] chr5 (3 HSPs)
chr5 (174-230)||(9120126-9120182)
chr5 (171-227)||(42561972-42562028)
chr5 (189-230)||(179421-179462)
[»] chr3 (4 HSPs)
chr3 (156-230)||(11024127-11024201)
chr3 (162-230)||(11015121-11015189)
chr3 (175-240)||(11005571-11005636)
chr3 (162-230)||(47451530-47451598)
[»] chr1 (4 HSPs)
chr1 (172-227)||(24367531-24367586)
chr1 (174-227)||(24310582-24310635)
chr1 (172-227)||(24416144-24416199)
chr1 (171-224)||(24323139-24323192)
[»] chr7 (1 HSPs)
chr7 (171-230)||(48884187-48884246)
[»] chr6 (2 HSPs)
chr6 (171-229)||(21979267-21979325)
chr6 (177-230)||(21016184-21016237)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 7823561 - 7823217
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823561 tacatgacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 7823462  T
Q  101 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7823461 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacaaatg 7823362  T
Q  201 cactttgtaatctttcaacacccatatttccattctttcaccatcagaagttagaatccatatgctcagagtttcgccaaatacccacaaaccagaatca 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823361 cactttgtaatctttaaacacccatatttccattctttcaccatcagaagttagaatccatatgctcagagtttcgccaaatacccacaaaccagaatca 7823262  T
Q  301 gcatctaaagtcagtccgccaaaatcattttgaataggtgtttca 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7823261 gcatctaaagtcagtccgccaaaatcattttgaataggtgtttca 7823217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 7801229 - 7800885
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7801229 tacatgacaactttggatggactgttacagaatgattgatgctttaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 7801130  T
Q  101 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7801129 taataatttcaccattttttgtggagtacataggggaaacgttcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 7801030  T
Q  201 cactttgtaatctttcaacacccatatttccattctttcaccatcagaagttagaatccatatgctcagagtttcgccaaatacccacaaaccagaatca 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7801029 cactttgtaatctttcaacacccatatttcaattctttcaccatcagaagttagaatccatatgctcagagtttcgcaaaatacccacaaaccagaatca 7800930  T
Q  301 gcatctaaagtcagtccgccaaaatcattttgaataggtgtttca 345  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||    
T  7800929 gcatctaaagtaagtccgccaaaatcattttgaagaggtatttca 7800885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 7814069 - 7813725
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7814069 tacatgacaactttggatggagcgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 7813970  T
Q  101 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813969 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 7813870  T
Q  201 cactttgtaatctttcaacacccatatttccattctttcaccatcagaagttagaatccatatgctcagagtttcgccaaatacccacaaaccagaatca 300  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813869 cactttgtattctttcaacacccatatttcaattctttcaccatcagaagttagaatccatatgctcagagtttcgccaaatacccacaaaccagaatca 7813770  T
Q  301 gcatctaaagtcagtccgccaaaatcattttgaataggtgtttca 345  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||    
T  7813769 gcatctaaagtcagtccgccgaaatcattttgaagaggtatttca 7813725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 7908733 - 7908665
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||    
T  7908733 atcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttc 7908665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7878969 - 7878746
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| |||||||| ||||||||| |||||||| ||  |||||  ||| | ||| ||||||  ||| |||||||||||| ||| ||||| | || || |||    
T  7878969 tacatgacaacttcggatggactattacagaaggagcgatgccttaataactgtcctttatcattatacttcaccaatctagtaccatgatttcttccaa 7878870  T
Q  101 taataatttcaccattttttgtggagtacataggggaaacattcaagttatctggaatgaaatcaacagaaagaacaagagttttattccaagacgaatg 200  Q
    |||||   |||||||||| ||| || || |||||   ||  |   ||| ||| ||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  7878869 taata---tcaccattttctgtagaatatataggttgaaagt---agtgatcaggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatg 7878776  T
Q  201 cactttgtaatctttcaacacccatatttc 230  Q
    ||||||||| ||||||| ||||||||||||    
T  7878775 cactttgtattctttcatcacccatatttc 7878746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 7790511 - 7790443
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  7790511 atcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttc 7790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 7773456 - 7773523
Alignment:
Q  163 tcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  7773456 tcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttc 7773523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 7771826 - 7771760
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatt 228  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||    
T  7771826 atcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 49043790 - 49043866
Alignment:
Q  154 ggaatgaaatcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||| ||||| ||||| ||||||||| ||| |||| ||||||||||||||||| ||||||| ||||||||||||    
T  49043790 ggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttc 49043866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 48864468 - 48864398
Alignment:
Q  160 aaatcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||| || |||||||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  48864468 aaatcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttc 48864398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 48156059 - 48156137
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttccattctttca 240  Q
    ||||| || ||| |||||||||||| ||||||| |||||||||||||| || |||| |||||||||||| | |||||||    
T  48156059 atcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttca 48156137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 48853106 - 48853044
Alignment:
Q  168 agaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||| ||| ||||||||||| |||||||||| |||||||  |||||||||||    
T  48853106 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttc 48853044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 49038518 - 49038576
Alignment:
Q  172 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttc 49038576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 48147358 - 48147411
Alignment:
Q  177 aagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttc 48147411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 7786886 - 7786827
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||||||||| |||||||||||  ||||||| ||||| ||||||| ||||||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttc 7786827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 45371713 - 45371772
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||||| ||| ||| |||||||||||||||||||||| |||||||  |||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttc 45371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 7237386 - 7237439
Alignment:
Q  175 acaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatt 228  Q
    |||||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 45384522 - 45384590
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||| || ||||||| |||| ||  ||||||||||||||||||| || ||||||| ||||||||||||    
T  45384522 atcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttc 45384590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 48870991 - 48870923
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||||||||| ||  |||||||||| | ||||||||| || |||| |||||| |||||    
T  48870991 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttc 48870923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 48876295 - 48876227
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||||||||| ||  |||||||||| | ||||||||| || |||| |||||| |||||    
T  48876295 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttc 48876227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 48886677 - 48886609
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||||||||||||||| ||  |||||||||| | ||||||||| || |||| |||||| |||||    
T  48886677 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttc 48886609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 48903366 - 48903318
Alignment:
Q  182 ttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||||||||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttc 48903318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 49048177 - 49048253
Alignment:
Q  154 ggaatgaaatcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||| ||||  ||||| ||||| ||| ||| |||| |||||||||||||| || ||||||| ||||||||||||    
T  49048177 ggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttc 49048253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  174 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccata 226  Q
    ||||||||||||| ||||||| |||||||||||||| |||| || ||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 7766064 - 7766005
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||||||| || ||| |||| ||||||| ||||||||| ||||||| ||||||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttc 7766005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  174 aacaagagttttattccaagacgaatgcactttgtaatctttcaacaccc 223  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||| |||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 48863696 - 48863631
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatat 227  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||  ||| |||| || |||||||||    
T  48863696 atcaatagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatat 48863631  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7766264 - 7766133
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| |||||||| |||||||||||| ||||| || |||||| |||| | ||| |||||   ||| |||||||||||| ||| |||| ||  | || |||    
T  7766264 tacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaa 7766165  T
Q  101 taataatttcaccattttttgtggagtacataggg 135  Q
    |||||   |||||||||| ||| || |||||||||    
T  7766164 taata---tcaccattttctgtagaatacataggg 7766133  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7787086 - 7786955
Alignment:
Q  1 tacaagacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaatatagaaccatcagttgttacaa 100  Q
    |||| |||||||| |||||||||||| ||||| || |||||| |||| | ||| |||||   ||| |||||||||||| ||| |||| ||  | || |||    
T  7787086 tacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaa 7786987  T
Q  101 taataatttcaccattttttgtggagtacataggg 135  Q
    |||||   |||||||||| ||| || |||||||||    
T  7786986 taata---tcaccattttctgtagaatacataggg 7786955  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 9120182 - 9120126
Alignment:
Q  174 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttc 9120126  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 42561972 - 42562028
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatat 227  Q
    |||||||||| | ||| ||||||| |||||||||||||| ||||||| |||||||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 179462 - 179421
Alignment:
Q  189 ccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||| |||||||||||||| ||||||| ||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttc 179421  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 11024127 - 11024201
Alignment:
Q  156 aatgaaatcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||| |||||| ||| || |||||||| ||| |||||||||||||||||||||| |||||||  |||||||||||    
T  11024127 aatgtaatcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttc 11024201  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 11015121 - 11015189
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||| ||| || ||||||||||||  ||||||||||||||||||||| |||||||  |||||||||||    
T  11015121 atcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttc 11015189  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 11005571 - 11005636
Alignment:
Q  175 acaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttccattctttca 240  Q
    |||||||  ||| |||||||||||||||||||||| |||||||  ||||||||||| ||| |||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 11005636  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 47451530 - 47451598
Alignment:
Q  162 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    ||||| || |||||||||||| || | |||||||||||  |||||||| ||||||| ||||||||||||    
T  47451530 atcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttc 47451598  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  172 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatat 227  Q
    ||||||||||||||| |||||||||||||||||||||| |||| ||  ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 24310635 - 24310582
Alignment:
Q  174 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatat 227  Q
    ||||||||||||| ||||||| || ||||||||||| ||||||| |||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 24416199 - 24416144
Alignment:
Q  172 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatat 227  Q
    ||||||||||||||| ||||||| || ||| ||||||| ||||||| |||||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatat 24416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacaccca 224  Q
    |||||||||||||||| || |||| || ||||||||||| ||||||| ||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 48884246 - 48884187
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||||||||| ||| ||||||||  |||||||||||| ||||||| |||| |||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttc 48884187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 21979267 - 21979325
Alignment:
Q  171 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatattt 229  Q
    |||||||||  | ||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  21979267 aagaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 21016237 - 21016184
Alignment:
Q  177 aagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttc 230  Q
    |||||| ||| ||||||||||||| |||||||| |||||||  |||||||||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttc 21016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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