View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_10 (Length: 479)
Name: NF3273_high_10
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 42745452 - 42745902
Alignment:
| Q |
19 |
gttatacccaccagcagcctttgtgtcaagggaggcatatgaagatatccaaataggaaacctgaatgttcccaaaggtgtttgcttatggactctgatc |
118 |
Q |
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| T |
42745452 |
gttatacccaccagcagcctttgtgtcaagggaggcatatgaagatatccaaataggaagcctgaatgttcccaaaggtgtttgcttatggactctgatc |
42745551 |
T |
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| Q |
119 |
ccaactttgcacagagatcctgaaatttggggaccagattccaacgagtttaaacccgaaaggttcagtgagggtgtgtcgaaggctatcaagtttccac |
218 |
Q |
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| T |
42745552 |
ccaactttgcacagagatcctgaaatttggggaccagattccaacgagtttaaacccgaaaggttcagtgagggtgtgtctaaggctatcaagtttccac |
42745651 |
T |
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| Q |
219 |
aagcgtatgtgccatttggaatcggcactcggttgtgcgtggggaagaactttgcaatggttgaactaaaggttgtgctagcccttattgtctccaagtt |
318 |
Q |
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| T |
42745652 |
aagcgtatgtgccatttggaatcggcactcggttgtgcgtggggaagaactttgcaatggttgaactaaaggttgtgctagcccttattgtctccaagtt |
42745751 |
T |
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| Q |
319 |
cagcttctctttgtctcctagttataagcattctcctgcatataatatgattgtagagccaggacatggtgtgtatcttctcattcagaagaactgatga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42745752 |
cagcttctctttgtctcctagttataagcattctcctgcatataatatgattgtagagccaggacatggtgtgtatcttctcattcagaagaactgatga |
42745851 |
T |
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| Q |
419 |
aaccaattcatcaactttaatgcacaagcatttgatttcttctggcctatg |
469 |
Q |
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| T |
42745852 |
aaccaattcatcaactttaatgcacaatcatttgatttcttctggcctatg |
42745902 |
T |
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