View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_high_12 (Length: 465)

Name: NF3273_high_12
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_high_12
NF3273_high_12
[»] chr5 (4 HSPs)
chr5 (44-449)||(40519265-40519670)
chr5 (150-298)||(40508315-40508463)
chr5 (305-429)||(41781994-41782118)
chr5 (315-429)||(40510566-40510680)
[»] chr2 (4 HSPs)
chr2 (303-429)||(18163560-18163686)
chr2 (49-108)||(14131248-14131306)
chr2 (49-108)||(31264850-31264908)
chr2 (51-108)||(20143062-20143118)
[»] chr6 (1 HSPs)
chr6 (50-108)||(34713594-34713651)
[»] chr4 (2 HSPs)
chr4 (50-109)||(16528659-16528717)
chr4 (50-108)||(19663375-19663432)
[»] chr7 (1 HSPs)
chr7 (42-111)||(20125675-20125743)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 44 - 449
Target Start/End: Original strand, 40519265 - 40519670
Alignment:
Q  44 tattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaatt-gcttaacctatctattttacaacaaatacg 142  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  40519265 tattggcaaatacactgtcttaaaattttctt-gataatttttgtcactgtatttatcatttcccaatttgcttaacctatctattttacaacaaatacg 40519363  T
Q  143 aaactattcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat 242  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40519364 aaactattcacgaattaatatggtcaggaacgtaagttctacaaataggacatgatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat 40519463  T
Q  243 gtggctacattttggaagtattctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctagtacagttatataccagatggccacatca 342  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  40519464 gtggctacattttggaagtaatctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctattacatttatataccagatggtcacatca 40519563  T
Q  343 acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacatattaattaacattgtgat 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40519564 acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacatattaattaacattgtgat 40519663  T
Q  443 gactttg 449  Q
    |||||||    
T  40519664 gactttg 40519670  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 298
Target Start/End: Original strand, 40508315 - 40508463
Alignment:
Q  150 tcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaatgtggcta 249  Q
    |||| ||||||| || |||  ||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||||||||| ||||||    
T  40508315 tcacgaattaatgtgatcaacaacataagttctacaaatgggacatgatccttgttggattagccacttgtcaatgcattctaaatgaaaaatatggcta 40508414  T
Q  250 cattttggaagtattctcaccaattcttcattctcaaaatcctgcaaat 298  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40508415 cattttggaagtattctgaccaattcttcattctcaaaatcctgcaaat 40508463  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 305 - 429
Target Start/End: Complemental strand, 41782118 - 41781994
Alignment:
Q  305 gacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcac 404  Q
    ||||||||| |||| |||||||||| ||||||| ||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  41782118 gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaattatttcccatggtctcatgaagaacttcaacatgtcacattcac 41782019  T
Q  405 acttttatgtaaattaacatattaa 429  Q
    |||||||||||||||||||||||||    
T  41782018 acttttatgtaaattaacatattaa 41781994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 315 - 429
Target Start/End: Original strand, 40510566 - 40510680
Alignment:
Q  315 tacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgt 414  Q
    |||| |||| |||| ||||| |||||||||||||||||||||||||||||  ||||||||||||  |||| ||    | |||||||||||||||||||||    
T  40510566 tacacttatctacccgatggtcacatcaacaatttaatgtgacaattatttcccatggtctcatcgacaattttggtacgtcacattcacacttttatgt 40510665  T
Q  415 aaattaacatattaa 429  Q
    || |||||| |||||    
T  40510666 aatttaacacattaa 40510680  T

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Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 303 - 429
Target Start/End: Original strand, 18163560 - 18163686
Alignment:
Q  303 atgacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattc 402  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  18163560 atgacaccctaataaatttatataccagatggccacatcaacaatttaatgtgacaatgattcctcatggtctcatgaacaacttcaacatgtcacattc 18163659  T
Q  403 acacttttatgtaaattaacatattaa 429  Q
    |||||||||||||||||||||||||||    
T  18163660 acacttttatgtaaattaacatattaa 18163686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 14131248 - 14131306
Alignment:
Q  49 gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc 108  Q
    |||||| |||||||||||||||||| || |||| |||||||  |||||||||||||||||    
T  14131248 gcaaatacactatcttaaaattttc-ttcataaattttgtcactgtatctatcatttccc 14131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 31264850 - 31264908
Alignment:
Q  49 gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc 108  Q
    |||||| ||||||||||||||||  |||||||| |||||||  |||||||||||||||||    
T  31264850 gcaaatacactatcttaaaatttg-tttgataaattttgtcactgtatctatcatttccc 31264908  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 20143062 - 20143118
Alignment:
Q  51 aaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc 108  Q
    |||| ||||||||| |||||||||| ||||| |||||||  |||||||||||||||||    
T  20143062 aaatacactatcttgaaattttctt-gataaattttgtcactgtatctatcatttccc 20143118  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 34713594 - 34713651
Alignment:
Q  50 caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc 108  Q
    ||||| |||||||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  34713594 caaatacactatcttaaaattttc-ttgataaattttgtcactgtatctatcatttccc 34713651  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 16528659 - 16528717
Alignment:
Q  50 caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccca 109  Q
    ||||| |||||||||||||||||| ||||||  | |||||| ||||||||||||||||||    
T  16528659 caaatacactatcttaaaattttc-ttgatacatgttgtcgctgtatctatcatttccca 16528717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 19663375 - 19663432
Alignment:
Q  50 caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc 108  Q
    ||||| |||| ||||||||||||||| ||||| |||||||  |||||||||||||||||    
T  19663375 caaatacactctcttaaaattttctt-gataaattttgtcactgtatctatcatttccc 19663432  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 20125675 - 20125743
Alignment:
Q  42 ggtattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaat 111  Q
    |||||| |||||| |||| |||| |||||||||| |||||  ||||||  ||||||||||||||||||||    
T  20125675 ggtattagcaaatacactgtcttcaaattttctt-gataaaatttgtcattgtatctatcatttcccaat 20125743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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