View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_14 (Length: 461)
Name: NF3273_high_14
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 42482191 - 42482622
Alignment:
| Q |
15 |
aataactaactagttaaagatttgcagaaatcagtttaaaaactttt-cttaatatgcatagacctgctttgtgggaatactgcagtatttgagccagtt |
113 |
Q |
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| T |
42482191 |
aataactaactagttaaagatttgcagaactcagtttaaaaactttttcttaatatgcatagacctgctttgtgggaatactgcagtatttgagccagtt |
42482290 |
T |
|
| Q |
114 |
gaaaaggaacttaattagtagttactaaatactaagttgattgaatgagcacttgagaagaaattgatataactaactgctggttgatgagacatgatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482291 |
gaaaaggaacttaattagtagttactaaatactaagttgattgaatgagcacttgagaagaaattgatataactaactgctggttgatgagacatgatat |
42482390 |
T |
|
| Q |
214 |
atggagtacttaggcagcttttgtgtcaccagttgtccttcccaccatttaaaacaaagagagcaacaaaacaactactagttttttggctgttgtccag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482391 |
atggagtacttaggcagcttttgtgtcaccagttgtccttcccaccatttaaaacaaagagagcaacaaaacaactactagttttttggctgttgtccag |
42482490 |
T |
|
| Q |
314 |
taaagataaacaatcataatgatttttagtactacaatttcagtttgtaattattatgtataaaatactttgtgagttgtgactcagtatgtcattatat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482491 |
taaagataaacaatcataatgatttttagtactacaatttctgtttgtaattattatgtataaaatactttgtgagttgtgactcagtatgtcattatat |
42482590 |
T |
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| Q |
414 |
catatctatttgcaataatcatgattagtttt |
445 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42482591 |
catatctatttgcaataatcatgattagtttt |
42482622 |
T |
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