View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_high_15 (Length: 450)
Name: NF3273_high_15
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 38886333 - 38885890
Alignment:
| Q |
7 |
tcgaagaatattatcaactatgttatattccatatgacaatatttgtaaaaaattaaatgattttacaaaatggggttatggtttcaacatttcatatta |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886333 |
tcgaataatgttatcaactatgttatattccatatgacaatatttgtaaaaaattaaatgattttacaaaatggggttatggtttcaacatttcatatta |
38886234 |
T |
|
| Q |
107 |
aataacaccattattcatgtactgttactagtgatttcctcnnnnnnnnnnnntgtactgttactattgatgtgctgaatagagaagagtttctaaaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886233 |
aataacaccattattcatgtactgttactagtgatttcctcaaaaataaaaaatgtactgttactattgatgtgctgaatagagaagagtttctaaaata |
38886134 |
T |
|
| Q |
207 |
gaatcacaggtcaatttttacatgttagtgagcttgaaaagtcatccactacattttttgcttctaaatttcaacaatcaagaacactttcgatgcatat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886133 |
gaatcacaggtcaatttttacatgttagtgagcttgaaaagtcatccactacattttttgcttctaaatttcaacaatcaagaacactttcgatgcatat |
38886034 |
T |
|
| Q |
307 |
aattcaatttttgctgaaagcaacgccaagaaacagaccaaaattgcaactagtacactctagtagtgtaagagtcaacattatgggtctgttctactaa |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886033 |
aattcaatttttgctgaaagcaatgccaagaaacagactaaaattgcaactagtacactctagtagtgtaagagtcaacattatgggtctgttctactaa |
38885934 |
T |
|
| Q |
407 |
aaaattatatcctctttgtttgtattcacaccagcaagtacaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38885933 |
aaaattatatcctctttgtttgtattcacaccagcaagtacaaa |
38885890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University