View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_23 (Length: 397)
Name: NF3273_high_23
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 15118879 - 15118500
Alignment:
| Q |
1 |
atgaaagtttcgtt-aaattaatcatgattgaattgaacaattctttcgtcgttttgtttttattatttaaagaaaaaacgaagctcaacggagagattt |
99 |
Q |
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| T |
15118879 |
atgaaagttttgtttaaactaattatgattgaattgaacaattctttcgtcgttttgtttttattatttaaagaaaaaacgaagctcaacggagagattt |
15118780 |
T |
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| Q |
100 |
gagttgcctgcaaaatgtaatgaaaatatttatctaacttgtctaaaataacaaatcacaaaaatatgtctataagattatcacaacatataaatcatgt |
199 |
Q |
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| T |
15118779 |
gaattgcctgcaaaatgtagtgaaaatatt-atccaacttgtctaaaataacaaatcacaaaaatatgtctataagattatgacaacatataaatcatgt |
15118681 |
T |
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| Q |
200 |
aagaactcaacaactcatttttctaaattgcaaatggaagtataatcatcctttttcacattgcaatgacaatagagaaaagttttgttgaaaaagattt |
299 |
Q |
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| T |
15118680 |
aagaactcaacaactcatttttctaaattgcaaatggaagtataatcatcctttttcacattgcaatgacaatagagaaaagttttgttgaaaaagattt |
15118581 |
T |
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| Q |
300 |
caccctttggac-nnnnnnnnntcatttacgaaaagtgtagtagaaaattgctaccttctagacattgatatggagataaa |
379 |
Q |
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| T |
15118580 |
caccctttagacaaaaaaaaaatcatttacgaaaagtgtagttgaaaattgctaccttctagacattgatatggagataaa |
15118500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 32638981 - 32639042
Alignment:
| Q |
218 |
ttttctaaattgcaaatggaagtataatcatcctttttcacattgcaatgacaatagagaaa |
279 |
Q |
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| T |
32638981 |
ttttttaaattgcaaatagaagtataatcatgatgttttgcattgcaatgacaatagtgaaa |
32639042 |
T |
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