View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_high_25 (Length: 385)
Name: NF3273_high_25
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 43942709 - 43942602
Alignment:
| Q |
145 |
tttaaaaaataacttataaaagtggcacaaagata-gatttaaaactatggagtattacttaagtcaagagatgcaaattagaggaagtcttacttagac |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942709 |
tttaaaaaataacttataaaagtggcacaaagatatgatttaaaactatggagtattacttaagtcaagagatgcaaattagaggaagtcttacttagac |
43942610 |
T |
|
| Q |
244 |
acaacttc |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
43942609 |
acaacttc |
43942602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 43943385 - 43943211
Alignment:
| Q |
1 |
tagtgagatgtgtggaaaacatagaaatgtcgtgaaagaaaagtgtataaaagagaatatttatcacaaattattagggtt------------------- |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43943385 |
tagtgagatgtgtggaaaacatagaaatgtcgtgaaagaaaaatgtataaaagagaatatttatcacaaattattagggtttaatttgtatagaccgaca |
43943286 |
T |
|
| Q |
82 |
---taaaaatatttttacatatataatcaatcaaatatatcattccatccatatttgtagagatattttaaaaaa |
153 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43943285 |
atgtaaaaatatttttacatttttaatcaatcaaatatatcattccatccatatttatagagatattttaaaaaa |
43943211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 164106 - 164149
Alignment:
| Q |
129 |
atatttgtagagatattttaaaaaataacttataaaagtggcac |
172 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
164106 |
atatttgtagagatattttaaaaactgactcataaaagtggcac |
164149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University