View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_28 (Length: 370)
Name: NF3273_high_28
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 34 - 355
Target Start/End: Complemental strand, 36730427 - 36730106
Alignment:
| Q |
34 |
catgttcatgttcttcacctactaagaatatctcaggtatatactcttcagggttgacccatgattgtgggtccctcataatggcatagacattgacaag |
133 |
Q |
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| T |
36730427 |
catgttcatgttcttcacctactaagaatctctcaggtatatactcttcagggttgacccatgattgtgggtccctcataatggcatagacattgacaag |
36730328 |
T |
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| Q |
134 |
tgtccttgtatgagctttgatatcatagccgttgattttgcaatcttctgatgattgtctaagagcaaacggtgccgttggatgaagtcttagcacttct |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730327 |
tgtccttgtatgagctttgatatcatagccgttgattttgcaatcttctgatgattgtctaagagcaaacggtgccgttggatgaagtcttagcacttct |
36730228 |
T |
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| Q |
234 |
ttcacacatgattgtaggtaaggcatttttggaatgtctgattctttaaccaatctattagtacctactacatcattaatctcagcccttaatttcttca |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730227 |
ttcacacatgattgtaggtaaggcatttttggaatgtctgattctttaaccaatctattagtacctactacatcattaatctcagcccttaatttcttca |
36730128 |
T |
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| Q |
334 |
atattttagggttgttcattat |
355 |
Q |
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|||||||||||||||||||||| |
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| T |
36730127 |
atattttagggttgttcattat |
36730106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 36730462 - 36730427
Alignment:
| Q |
11 |
atcatcaccatccattttattcacatgttcatgttc |
46 |
Q |
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| T |
36730462 |
atcatcaccatccattttattcacatgttcatgttc |
36730427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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