View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_high_30 (Length: 365)

Name: NF3273_high_30
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_high_30
NF3273_high_30
[»] chr3 (17 HSPs)
chr3 (1-270)||(45350057-45350343)
chr3 (290-365)||(29530565-29530640)
chr3 (290-365)||(35855212-35855287)
chr3 (298-365)||(19368945-19369012)
chr3 (290-365)||(26102154-26102229)
chr3 (316-365)||(11955529-11955578)
chr3 (290-365)||(8528107-8528182)
chr3 (290-365)||(28981821-28981896)
chr3 (316-362)||(22473678-22473724)
chr3 (303-352)||(22519210-22519259)
chr3 (288-365)||(40831930-40832007)
chr3 (312-352)||(8393593-8393633)
chr3 (312-352)||(18682519-18682559)
chr3 (304-352)||(19895662-19895710)
chr3 (312-365)||(11602168-11602221)
chr3 (311-352)||(26777867-26777908)
chr3 (304-352)||(4139364-4139412)
[»] chr4 (29 HSPs)
chr4 (290-365)||(50119961-50120036)
chr4 (290-365)||(3757734-3757809)
chr4 (290-365)||(13171633-13171708)
chr4 (290-365)||(51347496-51347571)
chr4 (290-365)||(24547339-24547414)
chr4 (312-365)||(30529282-30529335)
chr4 (313-365)||(8956947-8956999)
chr4 (313-365)||(8986919-8986971)
chr4 (313-365)||(37349817-37349869)
chr4 (290-365)||(20588570-20588645)
chr4 (290-365)||(36743205-36743280)
chr4 (316-365)||(53991555-53991604)
chr4 (298-365)||(24948290-24948357)
chr4 (298-365)||(29712386-29712453)
chr4 (313-363)||(9888895-9888945)
chr4 (316-362)||(35716305-35716351)
chr4 (316-365)||(578608-578657)
chr4 (312-365)||(17730463-17730516)
chr4 (312-365)||(39406235-39406288)
chr4 (298-365)||(3821202-3821269)
chr4 (290-365)||(43021900-43021975)
chr4 (312-352)||(5752481-5752521)
chr4 (313-365)||(50033712-50033763)
chr4 (298-365)||(39716721-39716788)
chr4 (304-353)||(35833429-35833478)
chr4 (304-352)||(12682772-12682820)
chr4 (304-352)||(46104201-46104249)
chr4 (290-365)||(16895993-16896068)
chr4 (315-365)||(15704144-15704194)
[»] chr8 (16 HSPs)
chr8 (290-365)||(36776412-36776487)
chr8 (291-365)||(40587696-40587770)
chr8 (290-365)||(24053922-24053997)
chr8 (298-365)||(25346050-25346117)
chr8 (315-365)||(32844182-32844232)
chr8 (313-365)||(8760732-8760784)
chr8 (313-365)||(25836269-25836321)
chr8 (312-365)||(41972986-41973039)
chr8 (313-365)||(1942820-1942872)
chr8 (290-365)||(9472160-9472234)
chr8 (313-363)||(8162781-8162831)
chr8 (290-358)||(45434998-45435066)
chr8 (290-365)||(40616098-40616173)
chr8 (298-365)||(42245736-42245803)
chr8 (312-365)||(44389009-44389062)
chr8 (304-352)||(7389220-7389268)
[»] chr1 (21 HSPs)
chr1 (290-365)||(46626328-46626403)
chr1 (290-365)||(38894763-38894838)
chr1 (290-365)||(19322348-19322423)
chr1 (298-365)||(33075660-33075727)
chr1 (298-365)||(22198911-22198978)
chr1 (316-365)||(29844885-29844934)
chr1 (313-363)||(28570756-28570806)
chr1 (316-365)||(10766220-10766269)
chr1 (304-365)||(47134726-47134787)
chr1 (298-365)||(1826809-1826876)
chr1 (313-365)||(42678405-42678457)
chr1 (298-352)||(1367307-1367361)
chr1 (312-365)||(16300419-16300472)
chr1 (312-352)||(17364620-17364660)
chr1 (313-365)||(50557858-50557909)
chr1 (290-365)||(19400739-19400814)
chr1 (298-352)||(4890114-4890168)
chr1 (298-352)||(29188317-29188371)
chr1 (298-352)||(33359716-33359770)
chr1 (315-365)||(52306102-52306152)
chr1 (304-352)||(5426238-5426286)
[»] chr5 (13 HSPs)
chr5 (290-363)||(36886974-36887047)
chr5 (296-365)||(30754423-30754492)
chr5 (313-365)||(6305453-6305505)
chr5 (313-365)||(43138550-43138602)
chr5 (290-365)||(17643389-17643464)
chr5 (318-365)||(42977836-42977883)
chr5 (313-363)||(754450-754500)
chr5 (312-365)||(12422348-12422401)
chr5 (313-365)||(12592472-12592524)
chr5 (298-352)||(3088048-3088102)
chr5 (298-365)||(25698721-25698788)
chr5 (298-352)||(41689291-41689345)
chr5 (312-352)||(33709830-33709870)
[»] chr2 (12 HSPs)
chr2 (293-365)||(19486200-19486272)
chr2 (290-365)||(10876575-10876648)
chr2 (298-365)||(17836983-17837050)
chr2 (312-365)||(32677187-32677240)
chr2 (311-365)||(19486115-19486169)
chr2 (316-365)||(9920913-9920962)
chr2 (291-365)||(42781020-42781094)
chr2 (304-352)||(28607243-28607291)
chr2 (298-352)||(2952773-2952827)
chr2 (298-352)||(9545792-9545846)
chr2 (298-365)||(10050193-10050260)
chr2 (298-349)||(18096507-18096558)
[»] chr7 (17 HSPs)
chr7 (281-365)||(44804519-44804603)
chr7 (298-365)||(29467767-29467834)
chr7 (294-365)||(34872181-34872252)
chr7 (298-361)||(35157003-35157066)
chr7 (316-365)||(3791513-3791562)
chr7 (313-365)||(24684637-24684689)
chr7 (298-352)||(11840464-11840518)
chr7 (298-352)||(21600987-21601041)
chr7 (312-365)||(29684117-29684170)
chr7 (312-352)||(688093-688133)
chr7 (312-352)||(9143506-9143546)
chr7 (298-365)||(39651152-39651219)
chr7 (304-352)||(49146139-49146187)
chr7 (298-352)||(17169040-17169094)
chr7 (298-352)||(39276629-39276683)
chr7 (304-352)||(4848370-4848418)
chr7 (313-353)||(42684816-42684856)
[»] scaffold0385 (1 HSPs)
scaffold0385 (313-365)||(8304-8356)
[»] scaffold0009 (2 HSPs)
scaffold0009 (290-365)||(108555-108630)
scaffold0009 (298-365)||(225451-225518)
[»] chr6 (10 HSPs)
chr6 (298-365)||(4897498-4897565)
chr6 (290-365)||(9737756-9737831)
chr6 (312-352)||(6969312-6969352)
chr6 (311-352)||(9981276-9981317)
chr6 (312-352)||(24443957-24443997)
chr6 (317-365)||(25529276-25529324)
chr6 (298-352)||(1218534-1218588)
chr6 (298-352)||(15045563-15045617)
chr6 (315-365)||(33328281-33328331)
chr6 (304-352)||(4107976-4108024)
[»] scaffold0381 (1 HSPs)
scaffold0381 (313-363)||(9600-9650)
[»] scaffold0759 (1 HSPs)
scaffold0759 (313-352)||(5908-5947)
[»] scaffold0057 (1 HSPs)
scaffold0057 (298-352)||(20596-20650)
[»] scaffold0051 (1 HSPs)
scaffold0051 (304-352)||(62084-62132)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 45350343 - 45350057
Alignment:
Q  1 tgccaaatacataagtaattgtgttcttgtcacatggtcaaggaaggaaaggtataagtgtgctacttggcttgcctgcttctgctatggcacgttttta 100  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  45350343 tgccaaatacagaagttattttgttcttgtcacatggtcaaggaaggaaaggtataagtgtgctacttggcttgcctgcttctgctatggaacgttttga 45350244  T
Q  101 agaattggagatgatcgaatgaaactactatattcatatactata-----------------ctacattctatcatttatgtgtaaatagcttgctgagc 183  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||                 |||||||||||||||||||||||||| |||||||||||    
T  45350243 agaattggtgatgatcgaatgaaacttctatattcatatactatactgcattacatatatacctacattctatcatttatgtgtaaatggcttgctgagc 45350144  T
Q  184 tattgaagttttttcttatatttgtgctaaatgtgttaagtatatataataaattttatgtaatgttacatttgtttcgtactacaa 270  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45350143 tattgaaattttttcttatatttgtgctaaatgtgttaagtatatataataaattttatgtaatgttacatttgtttcgtactacaa 45350057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 29530640 - 29530565
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  29530640 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggt 29530565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 35855212 - 35855287
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  || |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  35855212 ctaataagaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggt 35855287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 19369012 - 19368945
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19369012 aaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggt 19368945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 26102229 - 26102154
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||| || ||||||||||||| |||||||||    
T  26102229 ctaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggt 26102154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 11955578 - 11955529
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11955578 atttaccattttgcccctataaggggcaatttggtaatctacttattggt 11955529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 8528182 - 8528107
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  |||||||||||||| || ||| |||||||||||||||||||| || ||||||||    
T  8528182 ctaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggt 8528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 28981896 - 28981821
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||   |||||  ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  28981896 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggt 28981821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 22473678 - 22473724
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttatt 362  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22473678 atttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 22519210 - 22519259
Alignment:
Q  303 gaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  22519210 gaatgtccattgaatttaccattttgcccctataaggggcaatttagtaa 22519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 40832007 - 40831930
Alignment:
Q  288 tcctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||   |||||  |||||||||||||||||| || ||||||| ||||| ||||||||||| ||||||    
T  40832007 tcctaataagaaaatccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggt 40831930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 8393593 - 8393633
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8393593 ttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 18682519 - 18682559
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  18682519 ttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 19895710 - 19895662
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| |||||||||||||||||||||  |||| ||||||||||||||    
T  19895710 aatgtccattgaatttaccattttgcccttataaagggcaatttggtaa 19895662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 11602221 - 11602168
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||| |||||||||||||||| |||||||||||||  |||||||| | ||||||    
T  11602221 ttgattttaccattttgcccctataaggggcaattcagtaatctattaattggt 11602168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 26777908 - 26777867
Alignment:
Q  311 attgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| |||||||||||||||| || ||||||||||||||||    
T  26777908 attgattttaccattttgcccctatgaggggcaatttggtaa 26777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 4139412 - 4139364
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||| ||| || ||||||||||||||||    
T  4139412 aatgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 50120036 - 50119961
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50120036 ctaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 50119961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 3757734 - 3757809
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3757734 ctaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 3757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 13171633 - 13171708
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||  ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13171633 ctaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 13171708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 51347496 - 51347571
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  51347496 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggt 51347571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 24547339 - 24547414
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  24547339 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggt 24547414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 30529335 - 30529282
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30529335 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 30529282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 8956947 - 8956999
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8956947 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 8956999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 8986919 - 8986971
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8986919 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 8986971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 37349817 - 37349869
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37349817 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 37349869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 20588570 - 20588645
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||    
T  20588570 ctaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggt 20588645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 36743280 - 36743205
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  || |||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  36743280 ctaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggt 36743205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 53991604 - 53991555
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53991604 atttaccattttgcccctataaggggcaatttggtaatctacttattggt 53991555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 24948357 - 24948290
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  |||||||||||||||||| || |||||||||||||||| |||||||||||||||    
T  24948357 aaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggt 24948290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 29712386 - 29712453
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  || |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  29712386 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggt 29712453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 9888945 - 9888895
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9888945 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 35716351 - 35716305
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttatt 362  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  35716351 atttaccattttgcccctataaggggcaatttggtaatctacttatt 35716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 578657 - 578608
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  578657 atttaccattttgcccctataagggacaatttggtaatctacttattggt 578608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 17730463 - 17730516
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| ||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggt 17730516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 39406288 - 39406235
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  39406288 ttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggt 39406235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 3821269 - 3821202
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  3821269 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggt 3821202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 43021900 - 43021975
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| |||||   ||||||||||||| ||||| | || ||| |||||||||||||||||||||||||    
T  43021900 ctaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggt 43021975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 5752481 - 5752521
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  5752481 ttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 50033712 - 50033763
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  50033712 tgaatttaccattttgcccttataaggg-caatttggtaatctacttattggt 50033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 39716788 - 39716721
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||  || ||||||||    
T  39716788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggt 39716721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 35833478 - 35833429
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaat 353  Q
    |||||| ||||| |||||||||||||||| || |||||||||||||||||    
T  35833478 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaat 35833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 12682820 - 12682772
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  12682820 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 46104201 - 46104249
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  46104201 aatgtccattgattttaccattttgccccaatgaggggcaatttggtaa 46104249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 16895993 - 16896068
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||   |||||  |||||||||| |||||||||  ||||||||| ||||||||||||| | ||||||    
T  16895993 ctaataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggt 16896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 15704144 - 15704194
Alignment:
Q  315 aatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| |||||||| ||||||||||  |||| ||||||    
T  15704144 aatttaccattttgcccctataaggggaaatttggtaaattactaattggt 15704194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 36776412 - 36776487
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36776412 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 36776487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 40587770 - 40587696
Alignment:
Q  291 taataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40587770 taataagaaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 40587696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 24053922 - 24053997
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24053922 ctaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggt 24053997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 25346050 - 25346117
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggt 25346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 32844182 - 32844232
Alignment:
Q  315 aatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32844182 aatttaccattttgccccgataaggggcaatttggtaatctacttattggt 32844232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 8760732 - 8760784
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8760732 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 8760784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 25836321 - 25836269
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25836321 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 25836269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 41972986 - 41973039
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  41972986 ttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggt 41973039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 1942820 - 1942872
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  1942820 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggt 1942872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 9472160 - 9472234
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||| ||||||||||||| | |||| |||||||||||||||||||||||||||    
T  9472160 ctaataagaaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggt 9472234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 8162831 - 8162781
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  8162831 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 45434998 - 45435066
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctact 358  Q
    ||||||||||||   |||||  ||||||||||||||||||||  |||||||||||||||||||||||||    
T  45434998 ctaataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 40616173 - 40616098
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||   |||||  |||||||||||||||||| || ||||| ||||||||||||||||||| ||||||    
T  40616173 ctaataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggt 40616098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 42245803 - 42245736
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggt 42245736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 44389062 - 44389009
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||| |||  |||||||| |||||||||||||| | ||||||    
T  44389062 ttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggt 44389009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 7389220 - 7389268
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| |  ||||||||||||||||    
T  7389220 aatgtccattgattttaccattttgccccaaggaggggcaatttggtaa 7389268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 46626403 - 46626328
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46626403 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 46626328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 38894763 - 38894838
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||   |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38894763 ctaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 38894838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 19322423 - 19322348
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||  ||||||  ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19322423 ctaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggt 19322348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 33075727 - 33075660
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33075727 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 33075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 22198978 - 22198911
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  22198978 aaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggt 22198911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 29844934 - 29844885
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29844934 atttaccattttgcccctataaggggcaatttggtaatctacttattggt 29844885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 28570756 - 28570806
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  28570756 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 10766220 - 10766269
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  10766220 atttaccattttgcccctataagggtcaatttggtaatctacttattggt 10766269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 47134726 - 47134787
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  47134726 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggt 47134787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 1826809 - 1826876
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||    
T  1826809 aaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggt 1826876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 42678405 - 42678457
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  42678405 tgaatttaccattttatccctataaggggcaatttgataatctacttattggt 42678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 1367307 - 1367361
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||    
T  1367307 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 16300419 - 16300472
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| || |||||||||||||||||||  |||| ||||||    
T  16300419 ttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggt 16300472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 17364660 - 17364620
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  17364660 ttgaatttaccattttgcccctattaggggcaatttggtaa 17364620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 50557858 - 50557909
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||| ||||||    
T  50557858 tgaatttaccattttgtcct-ataaggggcaatttggtaatctactaattggt 50557909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 19400739 - 19400814
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||   |||||  ||||||||||||||||||||  |||||||| |||| ||||||||| | ||||||    
T  19400739 ctaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggt 19400814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 4890114 - 4890168
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||| | || ||||||||||||||||    
T  4890114 aaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 29188371 - 29188317
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || | ||||||||||||||    
T  29188371 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 33359716 - 33359770
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || | ||||||||||||||    
T  33359716 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 33359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 52306102 - 52306152
Alignment:
Q  315 aatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| ||||||||||||||| |||  |||| ||||||    
T  52306102 aatttaccattttgcccctataaggggcaatttgataaattactaattggt 52306152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 5426238 - 5426286
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||  | |||||||||||||||||    
T  5426238 aatgtccattgattttaccattttgcccttagaaggggcaatttggtaa 5426286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 36887047 - 36886974
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36887047 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattg 36886974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 30754423 - 30754492
Alignment:
Q  296 agaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30754423 agaaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 30754492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 6305505 - 6305453
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6305505 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 6305453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 43138602 - 43138550
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43138602 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 43138550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 17643464 - 17643389
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||  ||||||  ||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||    
T  17643464 ctaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggt 17643389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 42977883 - 42977836
Alignment:
Q  318 ttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggt 42977836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 754500 - 754450
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  754500 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 12422401 - 12422348
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  12422401 ttgattttaccattttgcccctataaggggcaatttggtaatctactaattggt 12422348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 12592524 - 12592472
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  12592524 tgaatttaccagtttacccctataaggggcaatttggtaatctacttattggt 12592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 3088102 - 3088048
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  3088102 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3088048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 25698788 - 25698721
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||  || ||||||||    
T  25698788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggt 25698721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 41689291 - 41689345
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || | ||||||||||||||    
T  41689291 aaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaa 41689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 33709870 - 33709830
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||||||||||||| |||| |||| ||||||||||||||    
T  33709870 ttgaatttaccattttacccctataaagggcaatttggtaa 33709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 19486200 - 19486272
Alignment:
Q  293 ataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19486200 ataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 19486272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 10876648 - 10876575
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  10876648 ctaataagaaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggt 10876575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 17836983 - 17837050
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17836983 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 17837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 32677240 - 32677187
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32677240 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 32677187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 19486169 - 19486115
Alignment:
Q  311 attgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  19486169 attgaatttatcattttgcccctataaggggcaatttggtaatctacttattggt 19486115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 9920962 - 9920913
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9920962 atttaccattttgcccctataaggggcaatttggtaatctacttattggt 9920913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 42781020 - 42781094
Alignment:
Q  291 taataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||| ||||||  ||||||||| ||||||| |||  |||||||||||||||||||||| ||||||||    
T  42781020 taataagaaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggt 42781094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 28607243 - 28607291
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  28607243 aatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 2952773 - 2952827
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||    
T  2952773 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 9545846 - 9545792
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||    
T  9545846 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 10050260 - 10050193
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| || |||||||||||| |||  |||| ||||||    
T  10050260 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggt 10050193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 18096507 - 18096558
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttgg 349  Q
    ||||| ||||||  ||||||||||||||||||||| |||||||| |||||||    
T  18096507 aaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 44804519 - 44804603
Alignment:
Q  281 gtctatttcctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||| | ||||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  44804519 gtctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggt 44804603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 29467767 - 29467834
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29467767 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 29467834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 34872181 - 34872252
Alignment:
Q  294 taagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||| ||||||  ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  34872181 taagaaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggt 34872252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 35157066 - 35157003
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttat 361  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttat 35157003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 3791513 - 3791562
Alignment:
Q  316 atttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3791513 atttaccattttgcccctataaggggcaatttggtaatctacttattggt 3791562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 24684689 - 24684637
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  24684689 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggt 24684637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 11840518 - 11840464
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  11840518 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 11840464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 21601041 - 21600987
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  21601041 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 21600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 29684170 - 29684117
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  29684170 ttgaatttaccattttacccctataaggggcaatttggtaatctactaattggt 29684117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 688093 - 688133
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  688093 ttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 9143506 - 9143546
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggtaa 9143546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 39651219 - 39651152
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||  |||| ||||||    
T  39651219 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggt 39651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 49146187 - 49146139
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  49146187 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 17169040 - 17169094
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || | ||||||||||||||    
T  17169040 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 17169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 39276629 - 39276683
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| |||| ||| ||||||||||    
T  39276629 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 39276683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 4848370 - 4848418
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| || ||||| ||||||||||    
T  4848370 aatgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 42684816 - 42684856
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaat 353  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  42684816 tgaatttaccattttgcccctataaggggcattttagtaat 42684856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 8356 - 8304
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8356 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggt 8304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 108555 - 108630
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||    
T  108555 ctaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggt 108630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 225451 - 225518
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  225451 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggt 225518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 4897565 - 4897498
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  4897565 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggt 4897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 9737831 - 9737756
Alignment:
Q  290 ctaataagaaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||    
T  9737831 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggt 9737756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 6969352 - 6969312
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6969352 ttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 9981317 - 9981276
Alignment:
Q  311 attgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  9981317 attgaatttaccattttacccctataaggggcaatttggtaa 9981276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 24443957 - 24443997
Alignment:
Q  312 ttgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  24443957 ttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 25529276 - 25529324
Alignment:
Q  317 tttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||| ||||||| || ||||||||||||||||||||||||| ||||||    
T  25529276 tttacgattttgctcctataaggggcaatttggtaatctactaattggt 25529324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 1218534 - 1218588
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || | ||||||||||||||    
T  1218534 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 15045617 - 15045563
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| |||| ||| ||||||||||    
T  15045617 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 33328331 - 33328281
Alignment:
Q  315 aatttaccattttgccccgataaggggcaatttggtaatctacttattggt 365  Q
    ||||||||||||||| || | |||||||||||||||| |||||| ||||||    
T  33328331 aatttaccattttgctcctacaaggggcaatttggtagtctactaattggt 33328281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 4107976 - 4108024
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| ||||||||||| |||| || ||||||||||||||||    
T  4107976 aatgtccattgattttaccatttttcccctatgaggggcaatttggtaa 4108024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 9600 - 9650
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaatctacttattg 363  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9600 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 5947 - 5908
Alignment:
Q  313 tgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5947 tgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 20650 - 20596
Alignment:
Q  298 aaaaggaatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||    
T  20650 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 62084 - 62132
Alignment:
Q  304 aatgtctattgaatttaccattttgccccgataaggggcaatttggtaa 352  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  62084 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 62132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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