View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_high_43 (Length: 298)

Name: NF3273_high_43
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_high_43
NF3273_high_43
[»] chr1 (8 HSPs)
chr1 (183-280)||(5932997-5933094)
chr1 (5-100)||(5934013-5934109)
chr1 (183-280)||(19253615-19253712)
chr1 (40-100)||(5933934-5933995)
chr1 (113-147)||(5933880-5933914)
chr1 (147-177)||(29836237-29836267)
chr1 (149-177)||(39076266-39076294)
chr1 (149-177)||(40981638-40981666)
[»] chr7 (3 HSPs)
chr7 (183-276)||(18196927-18197020)
chr7 (149-177)||(13761781-13761809)
chr7 (149-177)||(24759474-24759502)
[»] chr3 (2 HSPs)
chr3 (145-177)||(52126881-52126913)
chr3 (148-177)||(29129129-29129158)
[»] chr5 (4 HSPs)
chr5 (121-151)||(26044885-26044915)
chr5 (147-177)||(40946708-40946738)
chr5 (148-177)||(30463749-30463778)
chr5 (149-177)||(4077838-4077866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (148-177)||(230463-230492)
[»] chr4 (14 HSPs)
chr4 (144-177)||(1678493-1678526)
chr4 (148-177)||(14210463-14210492)
chr4 (148-177)||(14211432-14211461)
chr4 (148-177)||(14212383-14212412)
chr4 (148-177)||(14213352-14213381)
chr4 (148-177)||(14214320-14214349)
chr4 (148-177)||(14215289-14215318)
chr4 (148-177)||(14218160-14218189)
chr4 (148-177)||(14219130-14219159)
chr4 (148-177)||(14220099-14220128)
chr4 (148-177)||(14221050-14221079)
chr4 (148-177)||(14222019-14222048)
chr4 (148-177)||(14222988-14223017)
chr4 (148-177)||(14586882-14586911)
[»] chr8 (1 HSPs)
chr8 (149-177)||(38681137-38681165)
[»] chr2 (1 HSPs)
chr2 (149-177)||(26449093-26449121)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 5933094 - 5932997
Alignment:
Q  183 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgattggtg 280  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5933094 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcagacttcaagattggtggtggatgggaacgattggtg 5932997  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 5934109 - 5934013
Alignment:
Q  5 gttatatttatttatttcagccgaaagaacacttatttaatgtaatgtaacgtgga-cctatgtacaaaaacttgtgtggggtcctgccttcactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  5934109 gttatatttatttatttcagccgaaagaacacttatttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5934013  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 19253712 - 19253615
Alignment:
Q  183 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgattggtg 280  Q
    |||| ||||| |||||||| || ||||||| ||| || | || |||||||||||||||||||||||||| ||| || ||||| ||||||||| |||||    
T  19253712 tggtggatgagaatggcaatgtctggaactgcagccttctgtattcggagactccttatgcaaacttcaggatagggggtggctgggaacgaatggtg 19253615  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 5933995 - 5933934
Alignment:
Q  40 tttaatgtaatgtaacgtggacc-tatgtacaaaaacttgtgtggggtcctgccttcactac 100  Q
    |||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  5933995 tttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5933934  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 5933914 - 5933880
Alignment:
Q  113 cctttctaatcatatcatacttcatacttatttct 147  Q
    |||||||||||||||||||||||||| ||||||||    
T  5933914 cctttctaatcatatcatacttcatatttatttct 5933880  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 29836237 - 29836267
Alignment:
Q  147 taatcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||||    
T  29836237 taatcctttatatctaatcctagcaaacatg 29836267  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 39076294 - 39076266
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  39076294 atcctttatatctaatcctagcaaacatg 39076266  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 40981666 - 40981638
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatg 40981638  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 18196927 - 18197020
Alignment:
Q  183 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttcatgattggtggtggatgggaacgatt 276  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  18196927 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcaaacttcaggattggtggtggataggaacgatt 18197020  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 13761781 - 13761809
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  13761781 atcctttatatctaatcctagcaaacatg 13761809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 24759474 - 24759502
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatg 24759502  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 52126881 - 52126913
Alignment:
Q  145 tctaatcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||||||    
T  52126881 tctaatcctttatatctaatcctagcaaacatg 52126913  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 29129129 - 29129158
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  29129129 aatcctttatatctaatcctagcaaacatg 29129158  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 26044915 - 26044885
Alignment:
Q  121 atcatatcatacttcatacttatttctaatc 151  Q
    |||||||||||||||||||||||||||||||    
T  26044915 atcatatcatacttcatacttatttctaatc 26044885  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 40946708 - 40946738
Alignment:
Q  147 taatcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||||    
T  40946708 taatcctttatatctaatcctagcaaacatg 40946738  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 30463749 - 30463778
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  30463749 aatcctttatatctaatcctagcaaacatg 30463778  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 4077838 - 4077866
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatg 4077866  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 230463 - 230492
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  230463 aatcctttatatctaatcctagcaaacatg 230492  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 1678526 - 1678493
Alignment:
Q  144 ttctaatcctttatatctaatcctagcaaacatg 177  Q
    |||| |||||||||||||||||||||||||||||    
T  1678526 ttctgatcctttatatctaatcctagcaaacatg 1678493  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14210492 - 14210463
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14210492 aatcctttatatctaatcctagcaaacatg 14210463  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14211461 - 14211432
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14211461 aatcctttatatctaatcctagcaaacatg 14211432  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14212412 - 14212383
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14212412 aatcctttatatctaatcctagcaaacatg 14212383  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14213381 - 14213352
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14213381 aatcctttatatctaatcctagcaaacatg 14213352  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14214349 - 14214320
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14214349 aatcctttatatctaatcctagcaaacatg 14214320  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14215318 - 14215289
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14215318 aatcctttatatctaatcctagcaaacatg 14215289  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14218189 - 14218160
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14218189 aatcctttatatctaatcctagcaaacatg 14218160  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14219159 - 14219130
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14219159 aatcctttatatctaatcctagcaaacatg 14219130  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14220128 - 14220099
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14220128 aatcctttatatctaatcctagcaaacatg 14220099  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14221079 - 14221050
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14221079 aatcctttatatctaatcctagcaaacatg 14221050  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14222048 - 14222019
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14222048 aatcctttatatctaatcctagcaaacatg 14222019  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14223017 - 14222988
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14223017 aatcctttatatctaatcctagcaaacatg 14222988  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 14586911 - 14586882
Alignment:
Q  148 aatcctttatatctaatcctagcaaacatg 177  Q
    ||||||||||||||||||||||||||||||    
T  14586911 aatcctttatatctaatcctagcaaacatg 14586882  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 38681137 - 38681165
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatg 38681165  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 26449093 - 26449121
Alignment:
Q  149 atcctttatatctaatcctagcaaacatg 177  Q
    |||||||||||||||||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatg 26449121  T

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