View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_48 (Length: 280)
Name: NF3273_high_48
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 43514593 - 43514352
Alignment:
| Q |
29 |
ataaaataaacgtatgattatttcattctattcttaattgataccatgacacgtgttggcaacttgccatgttgtgtgatttactatacgggtatttgtc |
128 |
Q |
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| T |
43514593 |
ataaaataaacgtatgattattttattctattcttaattgataccatgacgcgtgttggcaacttgccatgttgtgtgatttactatacgggtatttgtc |
43514494 |
T |
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| Q |
129 |
catgtaagcttgctttaccttaacgtgacgcatgcttcctcctataaatatccacgaaacccatgaac-aagtgttttcaagcaccaacatttcctagtc |
227 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43514493 |
catgtaagcttgctttaccgtaacgtgacgcatgcttccacctataaatatccacgaaacccatgaacaaagtgttttcaagcaccaacatttcctagtc |
43514394 |
T |
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| Q |
228 |
ccaaaaacaatatccctcctttgtcgcttcttcctcgtctct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514393 |
ccaaaaacaatatccctcctttgtcgcttcttcctcgtctct |
43514352 |
T |
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