View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_49 (Length: 272)
Name: NF3273_high_49
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 29790312 - 29790073
Alignment:
| Q |
20 |
aacagtactctatcaacaagtcaaattgnnnnnnnntggttgcacaagtatctaattttttaattgattgtgtataattgtcaacatatctactaaactt |
119 |
Q |
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| T |
29790312 |
aacagtactctatcaacaagtcaaattgaaaaaaaatggttgcacaagtatctaattttttaattgattgtgtataattgtcaacatatctactaaactt |
29790213 |
T |
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| Q |
120 |
tcccgtgattcactagaaaaaacaattagtttttggcattatctcgtgaatgaataatgctataacgtgaaagatcattgcgttaagtaaaccacaaact |
219 |
Q |
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| T |
29790212 |
tcccgtgattcactagaaaaaacaattagtttttggcattatctcgtgaatgaataatgctataacgtgaaagatcattgcgttaagtaaaccacaaact |
29790113 |
T |
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| Q |
220 |
taaactctaaattatctccaacttttttctgtgggatcct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29790112 |
taaactctaaattatctccaacttttttctgtgggatcct |
29790073 |
T |
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