View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_high_51 (Length: 261)

Name: NF3273_high_51
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_high_51
NF3273_high_51
[»] chr1 (12 HSPs)
chr1 (3-253)||(5934475-5934725)
chr1 (1-102)||(5936169-5936270)
chr1 (174-220)||(28832164-28832210)
chr1 (176-220)||(32560997-32561041)
chr1 (176-215)||(14880852-14880891)
chr1 (176-210)||(7803429-7803463)
chr1 (176-220)||(2994782-2994826)
chr1 (174-222)||(12268975-12269023)
chr1 (176-220)||(16580792-16580836)
chr1 (176-216)||(22335382-22335422)
chr1 (176-220)||(34632193-34632237)
chr1 (176-220)||(36467018-36467062)
[»] chr7 (5 HSPs)
chr7 (172-220)||(16971016-16971064)
chr7 (176-220)||(21136855-21136898)
chr7 (174-220)||(47663376-47663422)
chr7 (176-220)||(41029296-41029340)
chr7 (173-209)||(41250051-41250087)
[»] chr6 (4 HSPs)
chr6 (176-220)||(5604610-5604654)
chr6 (176-220)||(14049877-14049921)
chr6 (176-220)||(20744162-20744206)
chr6 (174-210)||(34701169-34701205)
[»] chr5 (4 HSPs)
chr5 (176-220)||(19647501-19647545)
chr5 (174-222)||(12218276-12218324)
chr5 (183-223)||(24408526-24408566)
chr5 (176-212)||(40446007-40446043)
[»] chr4 (7 HSPs)
chr4 (176-220)||(22630353-22630397)
chr4 (176-220)||(37930840-37930884)
chr4 (178-220)||(6610289-6610331)
chr4 (145-220)||(19479470-19479544)
chr4 (174-210)||(42344621-42344657)
chr4 (176-220)||(43034335-43034379)
chr4 (176-216)||(48067157-48067197)
[»] chr2 (4 HSPs)
chr2 (144-210)||(690781-690846)
chr2 (177-220)||(12303604-12303647)
chr2 (174-220)||(11790327-11790373)
chr2 (176-220)||(4138015-4138059)
[»] scaffold0314 (2 HSPs)
scaffold0314 (176-223)||(863-910)
scaffold0314 (176-223)||(4372-4419)
[»] chr3 (5 HSPs)
chr3 (176-210)||(1456543-1456577)
chr3 (183-220)||(38798891-38798928)
chr3 (176-220)||(8075809-8075853)
chr3 (176-220)||(25727960-25728004)
chr3 (174-210)||(28430568-28430604)
[»] scaffold0334 (1 HSPs)
scaffold0334 (145-220)||(5176-5250)
[»] chr8 (4 HSPs)
chr8 (176-217)||(34461783-34461824)
chr8 (144-218)||(7204862-7204935)
chr8 (176-220)||(27571842-27571886)
chr8 (176-220)||(32944833-32944877)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 5934475 - 5934725
Alignment:
Q  3 ttgacaccaaccgtgatggaaaaatcagcagggaagagattgattctgttgttgattatgtcttagcatggttagagtccaagaattagtagtaatgatc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934475 ttgacaccaaccgtgatggaaaaatcagcagggaagagattgattctgttgttgattatgtcttagcatggttagagtccaagaattagtagtaatgatc 5934574  T
Q  103 gcgtccaagttttagttttattagattagatatagactcatagtccttgtgagtttagctcactgttagtagaacaatgtataatatttgcaaggtctga 202  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | ||||||||||||||||| | |||||||    
T  5934575 gcgtccaagttttagttttattagattagatatagacccaaagtccttgtgagtttagttcactgttagtgggacaatgtataatatttgtatggtctga 5934674  T
Q  203 ggttcaaatcccgaccactacnnnnnnngatatatacccaaaattacctat 253  Q
    |||||||| | || |||||||       |||||||||| ||||||||||||    
T  5934675 ggttcaaacctcggccactacaaaaaaagatatataccaaaaattacctat 5934725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5936169 - 5936270
Alignment:
Q  1 agttgacaccaaccgtgatggaaaaatcagcagggaagagattgattctgttgttgattatgtcttagcatggttagagtccaagaattagtagtaatga 100  Q
    |||||| ||||| ||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||||| ||    
T  5936169 agttgataccaatcgtgatggaaaaatcagtagggatgaaattgattttgttgttgattatgtcttagtttggttagagtctaagaattagtagtaaaga 5936268  T
Q  101 tc 102  Q
    ||    
T  5936269 tc 5936270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 28832210 - 28832164
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  28832210 gaacaatgcataatatatgcaaggtctgaggttcaaatcccgaccac 28832164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 32560997 - 32561041
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||    
T  32560997 acaatgtataatatatgcaaggtccggggttcaaatcccgaccac 32561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 14880852 - 14880891
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccg 215  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  14880852 acaatgcataatatatgcaaggtctgaggttcaaatcccg 14880891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 7803429 - 7803463
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||||||||| ||||||||||||||||||||    
T  7803429 acaatgtataatatatgcaaggtctgaggttcaaa 7803463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 2994782 - 2994826
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||||||| | |||||||| |||||||||    
T  2994782 acaatgtataatatatgcaaggtccggggttcaaaccccgaccac 2994826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12269023 - 12268975
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccacta 222  Q
    |||||||| ||||||| ||||||||| | |||||||| |||||||||||    
T  12269023 gaacaatgcataatatatgcaaggtccggggttcaaaccccgaccacta 12268975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 16580836 - 16580792
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||||||||| ||||| |||||| |||||    
T  16580836 acaatgtataatatatgcaaggtctggggttcgaatcccaaccac 16580792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 22335382 - 22335422
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccga 216  Q
    |||||| ||||||| |||||||||||||||||||| |||||    
T  22335382 acaatgcataatatatgcaaggtctgaggttcaaaccccga 22335422  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 34632193 - 34632237
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| |||||| || ||||||||||||||| ||||    
T  34632193 acaatgtataatatatgcaagatccgaggttcaaatcccggccac 34632237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 36467062 - 36467018
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||| | |||||||||||||||||||    
T  36467062 acaatgcataatatatgcaaggtataaggttcaaatcccgaccac 36467018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 16971016 - 16971064
Alignment:
Q  172 tagaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||||||| || |||||||||| |||||| |||||||||    
T  16971016 tagaacaatgtataatatatgtaaggtctgagattcaaaccccgaccac 16971064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 21136855 - 21136898
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  21136855 acaatgtataatatatgcaaggt-tgaggttcaaatcccgaccac 21136898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 47663422 - 47663376
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||    
T  47663422 gaacaatgtataatatatacaaggtctgaagttcaaaccccgaccac 47663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 41029296 - 41029340
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||||||| | ||||| ||||||||||||    
T  41029296 acaatgtataatatatgcaaggtccggggttcgaatcccgaccac 41029340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 41250087 - 41250051
Alignment:
Q  173 agaacaatgtataatatttgcaaggtctgaggttcaa 209  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  41250087 agaacaatgtataatatatgcaaggtccgaggttcaa 41250051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 5604654 - 5604610
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||    
T  5604654 acaatgtataatatatgcatagtctgaggttcaaatcccgaccac 5604610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 14049921 - 14049877
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| ||||||||||||||||||||| ||| ||||    
T  14049921 acaatgcataatatatgcaaggtctgaggttcaaattccggccac 14049877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 20744162 - 20744206
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| ||||||||||| |||||||| |||||||||    
T  20744162 acaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 34701169 - 34701205
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  34701169 gaacaatgcataatatatgcaaggtctgaggttcaaa 34701205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 19647545 - 19647501
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| || |||||||| ||||||||||||||||||    
T  19647545 acaatgtataatatatgtaaggtctggggttcaaatcccgaccac 19647501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12218324 - 12218276
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccacta 222  Q
    |||||||| |||| || |||||||||||  |||||||||||||||||||    
T  12218324 gaacaatgcataaaatatgcaaggtctggagttcaaatcccgaccacta 12218276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 24408526 - 24408566
Alignment:
Q  183 ataatatttgcaaggtctgaggttcaaatcccgaccactac 223  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  24408526 ataatatatgcaaggtctggggttcaaaccccgaccactac 24408566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 40446007 - 40446043
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatc 212  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  40446007 acaatgcataatatatgcaaggtctgaggttcaaatc 40446043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 22630397 - 22630353
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||    
T  22630397 acaatgcataatatatgcaaggtctgaggttcaaaccccgaccac 22630353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 37930884 - 37930840
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||    
T  37930884 acaatgcataatatatgcaaggtctgaggttcaaaccccgaccac 37930840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 6610289 - 6610331
Alignment:
Q  178 aatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||| ||||||||||| |||||||| |||||||||    
T  6610289 aatgtataatatatgcaaggtctggggttcaaaccccgaccac 6610331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 19479544 - 19479470
Alignment:
Q  145 gtccttgtgagtttagctcactgttagta-gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    ||||||||||| ||||||||  |||| || |||||||| ||||||| ||||||||| | |||||||| |||||||||    
T  19479544 gtccttgtgagcttagctca--gttaatatgaacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 19479470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 42344657 - 42344621
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  42344657 gaacaatgtataatatatgcaaggtccgaggttcaaa 42344621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 43034379 - 43034335
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  43034379 acaatgcataatatatgcaaggtctgaggttcaaaccccggccac 43034335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 48067157 - 48067197
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccga 216  Q
    |||||||||||||| |||||||  |||||||||||||||||    
T  48067157 acaatgtataatatatgcaaggcatgaggttcaaatcccga 48067197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 690781 - 690846
Alignment:
Q  144 agtccttgtgagtttagctcactgttagtaga-acaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||||||||||||||||  ||| | ||| |||||||||||||| ||||| ||||||||||||||    
T  690781 agtccttgtgagtttagctca--gttggaagagacaatgtataatatatgcaacgtctgaggttcaaa 690846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 12303604 - 12303647
Alignment:
Q  177 caatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||    
T  12303604 caatgtataatatatgcaaggtttgaagttcaaatcccgaccac 12303647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 11790373 - 11790327
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||| ||||||| | |||||| |||||||||||||||||||||    
T  11790373 gaacaatggataatatatacaaggtatgaggttcaaatcccgaccac 11790327  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 4138015 - 4138059
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||| ||||||||| ||| |||||| |||||||||    
T  4138015 acaatgtataatatatgcaaggtccgagattcaaaccccgaccac 4138059  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 910 - 863
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccactac 223  Q
    ||||| |||| ||| |||||||||||||||| ||||||||||||||||    
T  910 acaatctatagtatatgcaaggtctgaggttgaaatcccgaccactac 863  T

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Target: scaffold0314; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 4419 - 4372
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccactac 223  Q
    ||||| |||| ||| |||||||||||||||| ||||||||||||||||    
T  4419 acaatctatagtatatgcaaggtctgaggttgaaatcccgaccactac 4372  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 1456577 - 1456543
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||||||||| ||||||||||||||||||||    
T  1456577 acaatgtataatatatgcaaggtctgaggttcaaa 1456543  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 38798891 - 38798928
Alignment:
Q  183 ataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  38798891 ataatatatgcaaggtccgaggttcaaatcccgaccac 38798928  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 8075809 - 8075853
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  8075809 acaatgcataatatatgcaaggtctgaggttcaaaccccggccac 8075853  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 25728004 - 25727960
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||||    
T  25728004 acaatgcataatatatgcaaggtccggggttcaaatcccgaccac 25727960  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 28430604 - 28430568
Alignment:
Q  174 gaacaatgtataatatttgcaaggtctgaggttcaaa 210  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28430604 gaacaatgcataatatatgcaaggtctgaggttcaaa 28430568  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 5176 - 5250
Alignment:
Q  145 gtccttgtgagtttagctcactgttagta-gaacaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||||||||||||||||| |  | ||| | |||||| ||||||| |||||||||||||||||||| ||| |||||    
T  5176 gtccttgtgagtttagctcaat--tggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccaaccac 5250  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 34461824 - 34461783
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgac 217  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  34461824 acaatgtataatatatgtaaggtctgcggttcaaatcccgac 34461783  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 7204862 - 7204935
Alignment:
Q  144 agtccttgtgagtttagctcactgttagtag-aacaatgtataatatttgcaaggtctgaggttcaaatcccgacc 218  Q
    ||||||||| |||||| ||||  |||||||| ||||||||||||||| |||||||| | || |||||||| |||||    
T  7204862 agtccttgtaagtttatctca--gttagtaggaacaatgtataatatatgcaaggtttaagattcaaatctcgacc 7204935  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 27571886 - 27571842
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| ||||||| |||||||| || ||||||||||||||||||    
T  27571886 acaatgcataatatatgcaaggtttggggttcaaatcccgaccac 27571842  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 32944877 - 32944833
Alignment:
Q  176 acaatgtataatatttgcaaggtctgaggttcaaatcccgaccac 220  Q
    |||||| |||| || |||||||||||||||||||| |||||||||    
T  32944877 acaatgcataaaatatgcaaggtctgaggttcaaaccccgaccac 32944833  T

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