View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_52 (Length: 258)
Name: NF3273_high_52
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 2794191 - 2793969
Alignment:
| Q |
11 |
catcatcaagatgtgcttcgtacttaactggaaagcaataacaccaattaagatccagaaaataaaaaatgaaatatgatcatgaatgtatatatttata |
110 |
Q |
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| T |
2794191 |
catcatcaagacgtgcttcgtacttaactgcaaagcaataacaacaattaagatccagaaaataaaaaatgaaatatgatcatgaatgtatatatttata |
2794092 |
T |
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| Q |
111 |
cctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatcctccggct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2794091 |
cctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtgtcttcttcaccaaacctccatccttacaaatatcctccggct |
2793992 |
T |
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| Q |
211 |
ccgtcaacacaagaaaagaaata |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
2793991 |
ccgtcaacacaagaaaagaaata |
2793969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 2892012 - 2892217
Alignment:
| Q |
11 |
catcatcaagatgtgcttcgtacttaactggaaagcaataacaccaattaagatccagaa--------aataaaaaatgaaatatgatcatgaatgtata |
102 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2892012 |
catcatcaagacgtgcttcgtacttaactgcaaagcaataacaccaattaagatccagaaaatgagaaaataaaaaatgaaatatgatcatgaatgtata |
2892111 |
T |
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| Q |
103 |
tatttatacctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc |
202 |
Q |
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| T |
2892112 |
tatttatacctaaaacataatcataatcatcaacatgttgatatttgtcatccctgggcttgagtatcttctttaccaaacctccatccttacaaatatc |
2892211 |
T |
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| Q |
203 |
ctccgg |
208 |
Q |
| |
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|||||| |
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| T |
2892212 |
ctccgg |
2892217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 2877553 - 2877788
Alignment:
| Q |
11 |
catcatcaagatgtgcttcgtacttaactggaaagcaataacaccaattaagatcc--------agaaaataaaaaatgaaatatgatcatgaatgtata |
102 |
Q |
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||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
2877553 |
catcatcaagacgtgcttcatacttaactgcaaagcaataacaccaattaagatctggagaatgagaaaataaaaattgaaatatgatcatgaatgtatt |
2877652 |
T |
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| Q |
103 |
tatttatacctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc |
202 |
Q |
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| T |
2877653 |
tatttatacctaaaacata------atcatcaacatgttgatatttgtcatccccgggcttgagtatcttttttaccaaacctccatccttacaaatatc |
2877746 |
T |
|
| Q |
203 |
ctccggctccgtcaacacaagaaaagaaataccggaagaagt |
244 |
Q |
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| T |
2877747 |
ctccggctccgtcaacacaagaaaagaaataccggaagaagt |
2877788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 3158571 - 3158370
Alignment:
| Q |
11 |
catcatcaagatgtgcttcgtacttaactggaaagcaataacaccaattaagatccagaaaat--------aaaaaatgaaatatgatcatgaatgtata |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
3158571 |
catcatcaagaagtgcttcgtacttaactgcagagcaataacaccaattaagatccagaaaatgagaaaataaaaaatgaaatacgatcatgaatgtat- |
3158473 |
T |
|
| Q |
103 |
tatttatacctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc |
202 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158472 |
---ttatacctaaaacataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc |
3158376 |
T |
|
| Q |
203 |
ctccgg |
208 |
Q |
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|||||| |
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| T |
3158375 |
ctccgg |
3158370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 3506811 - 3506852
Alignment:
| Q |
161 |
cttgagtatcttctttaccaaacctccatccttacaaatatc |
202 |
Q |
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| T |
3506811 |
cttgagtatcttctttaacaaacctccatccttgcatatatc |
3506852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 17198200 - 17198240
Alignment:
| Q |
161 |
cttgagtatcttctttaccaaacctccatccttacaaatat |
201 |
Q |
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| T |
17198200 |
cttgagtatcttctttaacaaacctccatccttacatatat |
17198240 |
T |
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