View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_55 (Length: 253)
Name: NF3273_high_55
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47695289 - 47695045
Alignment:
| Q |
1 |
caaggaccccgatcaaagatttagaattggcatcttgtccaattgaattgttaatcttgtccaccaacctgttaacaaccatgttagtgcaccaaggatc |
100 |
Q |
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| T |
47695289 |
caaggaccccgatcaaagatttagaattggcatcttgtccaattgaattgttaatcttgtccaccaacctgttaacaaccatgttaatgcaccaaggatc |
47695190 |
T |
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| Q |
101 |
aaaaccatagtccaagattcctgccttatgaatttgtagtccgaactagaattacgaaggacggcactatagattggtttccattttcagcatcttacca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47695189 |
aaaaccatagtccaagatccctgccttatgaatttgtagtccgaactagaattacgaaggacggcactatagattggtttccattttcagcatcttacca |
47695090 |
T |
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| Q |
201 |
gtcaaagagcctagaatacattgtttttgcgaagccatctctgct |
245 |
Q |
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| T |
47695089 |
gtcaaagagcctagaatacattgtttttgcgaagccatctctgct |
47695045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35830606 - 35830671
Alignment:
| Q |
1 |
caaggaccccgatcaaagatttagaattggcatcttgtccaattgaattgttaatcttgtccacca |
66 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
35830606 |
caaggaccccaatcaaacatttagaattggggtcttgtccaattgaattattaatcttgtccacca |
35830671 |
T |
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