View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_58 (Length: 251)
Name: NF3273_high_58
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31131784 - 31131550
Alignment:
| Q |
1 |
tcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgtt |
100 |
Q |
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| T |
31131784 |
tcaaaagctttgacaaacgcgatttcgggaagagaagggatgagatattccggatcgaatccaaatgtgattatgcaaatattatcaaacgtaaaacgtt |
31131685 |
T |
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| Q |
101 |
ggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttcatggagaataggaagcagacgatcgttaagttcaacatccaccaccttttc |
200 |
Q |
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| T |
31131684 |
ggagaatatcttgaaaatcagggaggatcatttagtttttggaggcttcatggagaataggaaggagacggtcgttaagttcaacatccaccaccgtttc |
31131585 |
T |
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| Q |
201 |
gatgaatttgcggagggatttagtgttgaattcat |
235 |
Q |
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| T |
31131584 |
gatgaatttgcatggggatttagtgttgaattcat |
31131550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31127076 - 31126842
Alignment:
| Q |
1 |
tcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgtt |
100 |
Q |
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| T |
31127076 |
tcaaaggctttaacaaacgctgtttcgggaagagaagggaggagatactccggatcaaatccaaacgcaattatgcaaatattatcaaacgtgaaacgtt |
31126977 |
T |
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| Q |
101 |
ggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttcatggagaataggaagcagacgatcgttaagttcaacatccaccaccttttc |
200 |
Q |
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| T |
31126976 |
ggagaatatcttgaaaattagcgagaattgttttgttttccgaaacttcagagagaattggaagaaggcgatcgttgagttcaacatcgacaacagtttc |
31126877 |
T |
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| Q |
201 |
gatgaatttgcggagggatttagtgttgaattcat |
235 |
Q |
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| T |
31126876 |
aacgaattttcggagggatttagtgttgaattcat |
31126842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 31077713 - 31077524
Alignment:
| Q |
46 |
tactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggagg |
145 |
Q |
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| T |
31077713 |
tactccggatcgaatccaaacgcgattctgcagatactatcgaacgtaaaacgttggaggatatcttgaaaatcaagcagaaccgtttggtttttggaag |
31077614 |
T |
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| Q |
146 |
cttcatggagaataggaagcagacgatcgttaagttcaacatccaccaccttttcgatgaatttgcggagggatttagtgttgaattcat |
235 |
Q |
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| T |
31077613 |
cttcggagagaataggaagcagacgatcattgagttcaacctcgacgacagtttcgacaaatttacgtagagacttagtgttgaattcat |
31077524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 38655148 - 38655083
Alignment:
| Q |
55 |
tcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatca |
120 |
Q |
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| T |
38655148 |
tcgaaaccaaacgcgattttgcagatattgtcaaacgtgaaacgttggagaatgtcttggaaatca |
38655083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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