View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_6 (Length: 621)
Name: NF3273_high_6
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 2569197 - 2569543
Alignment:
| Q |
18 |
acaagtgctatttgtcagcgtactttggatgttggaac----------gtctttgcatgctcttgcttgactcatnnnnnnnntaatattggtatttata |
107 |
Q |
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| T |
2569197 |
acaagtgctatccgtcagcgtactttggatgttggaacttaatttgatgtctttgcatgctcttgcttcactcataaaaaaaaaaatagtggtatttata |
2569296 |
T |
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| Q |
108 |
taaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacact--ggtttccaattatattacatgatgttatcataaaggaatct |
205 |
Q |
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| T |
2569297 |
gaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacactatggtttccaattatattacatgatgttatcataaaggaatct |
2569396 |
T |
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| Q |
206 |
cctagagagtttctttaaaataaaaaatctccttgagagttggtcactataattaacttttacaatttattgtactaatttgaattcactcttttatatt |
305 |
Q |
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| T |
2569397 |
cctagagagtttctttaaaagaaaaaatctccttgagagttggtcactataattaacttttacaatttattgtactaatt---attcactcttttatatt |
2569493 |
T |
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| Q |
306 |
tgtgcatatttcttaacaaactccaaaaagacataatgaatatttgcactg |
356 |
Q |
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| T |
2569494 |
tgtgcat-tttcttaacaaactccaaaaagacataatgaatatttgcactg |
2569543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 428 - 608
Target Start/End: Original strand, 2569616 - 2569795
Alignment:
| Q |
428 |
aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg |
527 |
Q |
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| T |
2569616 |
aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg |
2569714 |
T |
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| Q |
528 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
608 |
Q |
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| T |
2569715 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
2569795 |
T |
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