View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_high_64 (Length: 248)

Name: NF3273_high_64
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_high_64
NF3273_high_64
[»] chr6 (8 HSPs)
chr6 (17-248)||(12438592-12438823)
chr6 (193-247)||(12340035-12340089)
chr6 (184-222)||(26602621-26602659)
chr6 (188-248)||(26592397-26592457)
chr6 (197-248)||(2423693-2423744)
chr6 (202-248)||(23142742-23142788)
chr6 (197-246)||(3291756-3291805)
chr6 (197-245)||(6698973-6699021)
[»] chr2 (8 HSPs)
chr2 (19-153)||(2433258-2433392)
chr2 (195-248)||(23492980-23493033)
chr2 (193-248)||(30832100-30832155)
chr2 (195-238)||(33434108-33434151)
chr2 (193-248)||(38763623-38763678)
chr2 (202-248)||(17695405-17695451)
chr2 (202-248)||(26607960-26608006)
chr2 (193-242)||(34437984-34438033)
[»] chr5 (6 HSPs)
chr5 (39-155)||(41621083-41621199)
chr5 (202-248)||(30512677-30512723)
chr5 (202-248)||(30553017-30553063)
chr5 (202-248)||(40530216-40530262)
chr5 (200-248)||(7827916-7827964)
chr5 (44-136)||(41654343-41654435)
[»] chr8 (9 HSPs)
chr8 (188-248)||(28072118-28072178)
chr8 (205-248)||(45425664-45425707)
chr8 (193-247)||(6323321-6323375)
chr8 (202-248)||(42972503-42972549)
chr8 (207-248)||(10097991-10098032)
chr8 (202-247)||(17719253-17719298)
chr8 (203-248)||(31271096-31271141)
chr8 (202-242)||(51193-51233)
chr8 (200-248)||(32678793-32678841)
[»] chr7 (9 HSPs)
chr7 (193-248)||(25530982-25531037)
chr7 (200-248)||(44180287-44180335)
chr7 (193-248)||(14063398-14063453)
chr7 (193-248)||(14373426-14373481)
chr7 (193-248)||(29121585-29121640)
chr7 (202-248)||(5524462-5524508)
chr7 (202-248)||(28103815-28103861)
chr7 (196-248)||(7930135-7930187)
chr7 (200-248)||(24516288-24516336)
[»] chr1 (5 HSPs)
chr1 (193-248)||(11642240-11642295)
chr1 (193-248)||(15444469-15444524)
chr1 (202-248)||(26093469-26093515)
chr1 (202-248)||(35367642-35367688)
chr1 (207-248)||(3158017-3158058)
[»] chr4 (11 HSPs)
chr4 (193-245)||(11024881-11024933)
chr4 (200-248)||(35380331-35380379)
chr4 (200-248)||(42517636-42517684)
chr4 (202-248)||(33790731-33790777)
chr4 (206-248)||(34321715-34321757)
chr4 (202-248)||(44536196-44536242)
chr4 (202-248)||(51625158-51625204)
chr4 (203-248)||(11288631-11288676)
chr4 (193-222)||(39157864-39157893)
chr4 (204-248)||(5618617-5618661)
chr4 (200-248)||(7061662-7061710)
[»] chr3 (5 HSPs)
chr3 (202-248)||(10366636-10366682)
chr3 (202-248)||(24569094-24569140)
chr3 (198-248)||(25090044-25090094)
chr3 (207-248)||(52290968-52291009)
chr3 (200-248)||(43719341-43719389)
[»] scaffold0049 (1 HSPs)
scaffold0049 (191-248)||(55401-55458)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 12438592 - 12438823
Alignment:
Q  17 acatatcccttgcttccaacaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12438592 acatatcccttgcttccaacaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttctgaaaaggcccattctaaagttg 12438691  T
Q  117 tagctgatgtcccacttccagcaaaaaatatatcctgcatatcaagtgtacattcagactatctaactgttctatctgagttttacacgattattaagaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12438692 tagctgatgtcccacttccagcaaaaaatatatcctgcatatcaagtgtacattcagactatctaattgttctatctgagttttacacgattattaagaa 12438791  T
Q  217 aatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||||||||||||||    
T  12438792 aatgatgaatagtattgattttaatggtaaaa 12438823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 12340089 - 12340035
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaa 247  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||||| ||||    
T  12340089 tgagttttacacgattattaagaaaatgattagtagtgttgattttaatgataaa 12340035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 26602659 - 26602621
Alignment:
Q  184 tgttctatctgagttttacacgattattaagaaaatgat 222  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  26602659 tgttctatttgagttttacacgattattaagaaaatgat 26602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 26592457 - 26592397
Alignment:
Q  188 ctatctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||| |||||||||  | ||||||||| ||||||| |||| ||||||||||||||||||||    
T  26592457 ctatttgagttttaggcaattattaaggaaatgattaataatattgattttaatggtaaaa 26592397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 2423744 - 2423693
Alignment:
Q  197 ttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||| ||||||| |||||||||| |||| | ||||||||||||||||||    
T  2423744 ttttacatgattattcagaaaatgattaatattgttgattttaatggtaaaa 2423693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 23142788 - 23142742
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  23142788 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 23142742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 3291756 - 3291805
Alignment:
Q  197 ttttacacgattattaagaaaatgatgaatagtattgattttaatggtaa 246  Q
    |||| ||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  3291756 ttttgcacgattattaaggaaatgattaattgtatcgattttaatggtaa 3291805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 6699021 - 6698973
Alignment:
Q  197 ttttacacgattattaagaaaatgatgaatagtattgattttaatggta 245  Q
    ||||||| | ||||||||||||| || |||||| |||||||||||||||    
T  6699021 ttttacatggttattaagaaaataattaatagtgttgattttaatggta 6698973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 2433392 - 2433258
Alignment:
Q  19 atatcccttgcttccaacaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgta 118  Q
    |||||| ||| ||||||  || || |||||||||||||||||||||||||  ||||| || ||||||| |||||| ||||| |||||||||||||||| |    
T  2433392 atatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaa 2433293  T
Q  119 gctgatgtcccacttccagcaaaaaatatatcctg 153  Q
    | || |||  |||||||||||||||  ||||||||    
T  2433292 gatgttgtttcacttccagcaaaaatgatatcctg 2433258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 23493033 - 23492980
Alignment:
Q  195 agttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||||||||||    
T  23493033 agttttacacgattattaaaaaaatgattaacagtgttgattttaatggtaaaa 23492980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 30832100 - 30832155
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||||| |||||||| || |||||| ||||||||||||| ||||    
T  30832100 tgagttttacacgattataaagaaaataattaatagtgttgattttaatggcaaaa 30832155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 33434151 - 33434108
Alignment:
Q  195 agttttacacgattattaagaaaatgatgaatagtattgatttt 238  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||    
T  33434151 agttttacacgaatattaagaaaatgattaataatattgatttt 33434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 38763678 - 38763623
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| |||||||| ||||| | | |||| ||||||||||||||||||    
T  38763678 tgagttttacacggttattaaggaaatggttagtagtgttgattttaatggtaaaa 38763623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 17695451 - 17695405
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  17695451 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaa 17695405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 26607960 - 26608006
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  26607960 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 26608006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 34437984 - 34438033
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatg 242  Q
    ||||||||||||| ||||||| |||||||| |||| | ||||||||||||    
T  34437984 tgagttttacacggttattaaaaaaatgattaataatgttgattttaatg 34438033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 41621083 - 41621199
Alignment:
Q  39 catgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagc 138  Q
    |||| ||||||||| |||||||| |||| |||| ||| || ||||||| |||||| || ||||||||||| | |||||||| ||||| | |||||||| |    
T  41621083 catgtctaacttcttcttgagcccttttcaatattctagggtttttcagcatttctgagaaggcccattccatagttgtagttgatggctcacttccacc 41621182  T
Q  139 aaaaaatatatcctgca 155  Q
    || ||  ||||||||||    
T  41621183 aataataatatcctgca 41621199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 30512677 - 30512723
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  30512677 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaa 30512723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 30553017 - 30553063
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  30553017 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaa 30553063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 40530216 - 40530262
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  40530216 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 40530262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 7827916 - 7827964
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||||||| || ||| || ||||||| ||||||||||    
T  7827916 tacacgattattaagaaaataattaattgtgttgatttcaatggtaaaa 7827964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 41654435 - 41654343
Alignment:
Q  44 ctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttcca 136  Q
    ||||||||| ||||||||||||| | |||||| || ||||||| |||||| || || ||||||| || ||||   | ||||||| ||||||||    
T  41654435 ctaacttcttcttgagcctttttcattactctagggtttttcagcatttctgagaaagcccattgtatagttaaggatgatgtctcacttcca 41654343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 28072118 - 28072178
Alignment:
Q  188 ctatctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||| | |||||||| ||||||| |||||| ||||||||||||| ||||    
T  28072118 ctatctgagttttacatggttattaaggaaatgattaatagtgttgattttaatggcaaaa 28072178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 45425664 - 45425707
Alignment:
Q  205 gattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||||| ||| || ||||||||||||||||||    
T  45425664 gattattaagaaaatgattaattgtgttgattttaatggtaaaa 45425707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 6323321 - 6323375
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaa 247  Q
    |||||||||||| |||||||| |||||||| |||| | |||||||||||| ||||    
T  6323321 tgagttttacacaattattaaaaaaatgattaataattttgattttaatgataaa 6323375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 42972503 - 42972549
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  42972503 cacgattattaagaaaatgattaattgttttgatttcaatggtaaaa 42972549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 10097991 - 10098032
Alignment:
Q  207 ttattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||| ||| ||||||||||| |||||||||    
T  10097991 ttattaagaaaatgattaattgtattgattttgatggtaaaa 10098032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 17719253 - 17719298
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaa 247  Q
    |||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  17719253 cacgattattaaaaaaatgattaattgtaatgattttaatggtaaa 17719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 31271141 - 31271096
Alignment:
Q  203 acgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||  || || ||||||||||||||||||    
T  31271141 acgattattaagaaaatgattgattgtgttgattttaatggtaaaa 31271096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 51233 - 51193
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatg 242  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  51233 cacgattattaagaaaatgattaattgtgttgattttaatg 51193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 32678841 - 32678793
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||| ||||||| ||| || |||||||| |||||||||    
T  32678841 tacacgattattaaggaaatgattaattgtgttgattttgatggtaaaa 32678793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 25530982 - 25531037
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||| ||| |||||||| |||||| ||||||||||||| ||||    
T  25530982 tgagttttacacgattactaaaaaaatgattaatagtgttgattttaatggcaaaa 25531037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 44180335 - 44180287
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  44180335 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 44180287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 14063453 - 14063398
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||| ||||||| ||||||| | || | ||||||||||||||||||    
T  14063453 tgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaa 14063398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 14373481 - 14373426
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||| ||||||| ||||||| | || | ||||||||||||||||||    
T  14373481 tgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaa 14373426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 29121640 - 29121585
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| ||| |||| ||||||| |||| | ||||||||||||||||||    
T  29121640 tgagttttacacggttactaaggaaatgatcaatattgttgattttaatggtaaaa 29121585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 5524508 - 5524462
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  5524508 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 5524462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 28103861 - 28103815
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  28103861 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 28103815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 7930187 - 7930135
Alignment:
Q  196 gttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||| |||||||||||||||| | |||| ||||||| ||||| ||||    
T  7930187 gttttacacggttattaagaaaatgattagtagtgttgatttcaatggaaaaa 7930135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 24516288 - 24516336
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||| |||||||| ||| || ||||||| ||||||||||    
T  24516288 tacacgattattaataaaatgattaattgtgttgatttcaatggtaaaa 24516336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 11642295 - 11642240
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||| | |||||||||||||||| |||| | ||||||||||||||||||    
T  11642295 tgagttttacatggttattaagaaaatgattaatattgttgattttaatggtaaaa 11642240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 15444469 - 15444524
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||| | | |||||||| ||||||| |||||| ||||||||||||||||||    
T  15444469 tgagttttatatggttattaaggaaatgattaatagtgttgattttaatggtaaaa 15444524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 26093515 - 26093469
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  26093515 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 26093469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 35367642 - 35367688
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||||    
T  35367642 cacgattattaagaaaatgattaattgtgttgattttgatggtaaaa 35367688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 3158017 - 3158058
Alignment:
Q  207 ttattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  3158017 ttattaagaaaatgattaataatattgattttaatgataaaa 3158058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 11024881 - 11024933
Alignment:
Q  193 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggta 245  Q
    |||||||||||||   |||||||||||||| |||||| |||||||||||||||    
T  11024881 tgagttttacacggaaattaagaaaatgattaatagtgttgattttaatggta 11024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 35380331 - 35380379
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||||| |||  | ||||||||||||||||||    
T  35380331 tacacgattattaagaaaatgattaattatgttgattttaatggtaaaa 35380379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42517636 - 42517684
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  42517636 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 42517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 33790731 - 33790777
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||||    
T  33790731 cacgattattaagaaaatgattaattgtgttgattttgatggtaaaa 33790777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 34321715 - 34321757
Alignment:
Q  206 attattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||| ||| || ||||||||||||||||||    
T  34321715 attattaagaaaatgattaattgtgttgattttaatggtaaaa 34321757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 44536196 - 44536242
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||| ||||||| ||| || ||||||||||||||||||    
T  44536196 cacgattattaaggaaatgattaattgtgttgattttaatggtaaaa 44536242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 51625204 - 51625158
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  51625204 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 51625158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 11288631 - 11288676
Alignment:
Q  203 acgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  11288631 acgattattaagaaaatgattaattgtattgatttcaatggcaaaa 11288676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 39157864 - 39157893
Alignment:
Q  193 tgagttttacacgattattaagaaaatgat 222  Q
    ||||||||||||||||||||||||||||||    
T  39157864 tgagttttacacgattattaagaaaatgat 39157893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 5618661 - 5618617
Alignment:
Q  204 cgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||| |||||||||| | || ||||||||||||||||||    
T  5618661 cgattattaaaaaaatgatgagttgtgttgattttaatggtaaaa 5618617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 7061662 - 7061710
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||| ||||||| ||| || ||||||| ||||||||||    
T  7061662 tacacgattattaaggaaatgattaattgtgttgatttcaatggtaaaa 7061710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 10366636 - 10366682
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  10366636 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 10366682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 24569094 - 24569140
Alignment:
Q  202 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  24569094 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 24569140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 25090044 - 25090094
Alignment:
Q  198 tttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||||||||||||||||||||||| | |||| || |||||||| ||||||    
T  25090044 tttacacgattattaagaaaatgattagtagtgttaattttaattgtaaaa 25090094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 52291009 - 52290968
Alignment:
Q  207 ttattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||||||||||| ||| ||||||||||| |||||||||    
T  52291009 ttattaagaaaatgattaattgtattgattttgatggtaaaa 52290968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 43719389 - 43719341
Alignment:
Q  200 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    |||||||| ||||| |||||||| ||| || ||||||||||||||||||    
T  43719389 tacacgatcattaataaaatgattaattgtgttgattttaatggtaaaa 43719341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 55458 - 55401
Alignment:
Q  191 tctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 248  Q
    ||||| ||||||||| |||||||||||||  | ||||  |||||||||||||||||||    
T  55458 tctgatttttacacggttattaagaaaatatttaataaaattgattttaatggtaaaa 55401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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