View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_7 (Length: 560)
Name: NF3273_high_7
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 44390474 - 44391027
Alignment:
| Q |
17 |
acaaactatgtaagttgtgatggttttaataaggaccttgcccgtatttgcttcgaatgtcctttttattgtgcaggtttggcgtatgaatggactttga |
116 |
Q |
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| T |
44390474 |
acaaactatgtaagttgtgatggttctaataaggaccttgcccgtatttgcttcaaatgttctttttactgtgcaggtttggcgtaggaatggactttga |
44390573 |
T |
|
| Q |
117 |
g----------gttcatcgaaaagaactcaatggttgacactatttttcgaattgttacatcagttattacaagag----------attttgttgttgtg |
196 |
Q |
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| T |
44390574 |
gtccataaggcgttcatcgaaaagaactcaatggttgacactatttttcgaattgttacatcagctattacaagagctttctcaacattttgttgttgtg |
44390673 |
T |
|
| Q |
197 |
ctatggagcatattgaaatagaaacctcaagctctggcaagatgtctcataatcttgtgttcaggtccttgatcgcacctgtcccctaatagaggattgt |
296 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
44390674 |
ctatggagcatattgaactagaaacctcaagctctggcaagatgtctcataatcttgtgttcaggtccttgatcacacctgtcacctaatagaggattgt |
44390773 |
T |
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| Q |
297 |
gtttcagctaatgccactattttggcagctagtcacggtaccaactcaacaaacttcctgcgatgatcaaacgatagctacaacaacataaaggcaaggt |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390774 |
gtttcagctaatgccactattttggcagctagtcatggtaccaactcaacaaacttcctgcgatgatcaaacgatagctacaacaacataaaggcaaggt |
44390873 |
T |
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| Q |
397 |
gcattaggtatgattcgtaatccctatacttcaacgatggttgttacaactctagttaggtgacaacgcccacaaagagttttctttaaatgtaatgtcg |
496 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44390874 |
gcattaggtatgcttcgtaatccctatacttcaatgatggttgttacaactctagttaggtgacaacgccggcaaagagttttctttaaatgtaatgtcg |
44390973 |
T |
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| Q |
497 |
atgcaactttctccaaacatttgaataaaacgagtattgttatttgtatctgtg |
550 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44390974 |
atacaactttctccaaacatttgaataaaacgagcattgttatttgtatctgtg |
44391027 |
T |
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