View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_high_75 (Length: 238)
Name: NF3273_high_75
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 31664992 - 31664775
Alignment:
| Q |
17 |
aattaggccacaaccattcctcacaaaaacatttgatgtagttgatgatcaaagtaccaaccatatagtttcatggaacaggagtggcacaagttttgtg |
116 |
Q |
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| T |
31664992 |
aattaggccacaaccattcctcacaaaaacatttgatgtagttgatgatcaaagtaccaaccatatagtttcatggaacaggagtggcacaagttttgtg |
31664893 |
T |
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| Q |
117 |
gtttgggatacacatgccttctccaatcttctccttcccagatacttcaaacacaataatttctcaagctttgtcagacaactaaacacttatgtaagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664892 |
gtttgggatacacatgccttctccaatcttctccttcccagatacttcaaacacaataatttctcaagctttgtcagacaactaaacacttatgtaagta |
31664793 |
T |
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| Q |
217 |
c-tactctctaattaaat |
233 |
Q |
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| T |
31664792 |
cttactctctaattaaat |
31664775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 46489150 - 46489113
Alignment:
| Q |
29 |
accattcctcacaaaaacatttgatgtagttgatgatc |
66 |
Q |
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| T |
46489150 |
accattcctcacaaaaacatatgatatagttgatgatc |
46489113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 38334548 - 38334683
Alignment:
| Q |
81 |
atagtttcatggaacaggagtggcacaagttttgtggtttgggatacacatgccttctccaatcttctccttcccagatacttcaaacacaataatttct |
180 |
Q |
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||||||||||||| ||| |||| | || ||||| ||||||||| || |||| ||||||| || ||||| ||||||||||||||||| ||||||| |
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| T |
38334548 |
atagtttcatggagcagaggtggtgctagctttgttgtttgggatccaaatgctttctccagagaccttcttcctagatacttcaaacacaacaatttct |
38334647 |
T |
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| Q |
181 |
caagctttgtcagacaactaaacacttatgtaagta |
216 |
Q |
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|||| ||||| |||||||| ||||| |||||||||| |
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| T |
38334648 |
caagttttgttagacaactcaacacctatgtaagta |
38334683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 32734717 - 32734772
Alignment:
| Q |
161 |
cttcaaacacaataatttctcaagctttgtcagacaactaaacacttatgtaagta |
216 |
Q |
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|||||||||||| |||||||| |||||||| | ||||| |||||||||||||||| |
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| T |
32734717 |
cttcaaacacaacaatttctctagctttgttcgtcaactcaacacttatgtaagta |
32734772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 44617312 - 44617349
Alignment:
| Q |
162 |
ttcaaacacaataatttctcaagctttgtcagacaact |
199 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| |
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| T |
44617312 |
ttcaaacacaataatttctccagcttcgtcagacaact |
44617349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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