View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_10 (Length: 513)
Name: NF3273_low_10
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 37887393 - 37887889
Alignment:
| Q |
1 |
taagtgatccaagagtataatctatcgaaataataagaaaacaaatatccagagtataaccgacctaccttaagtatatataaatgaaaaagtaaaatat |
100 |
Q |
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| T |
37887393 |
taagtgatccaagattataatctatcgaaataataagaaaacaaatatccatagtataaccgacctaccttaagtatatataaatgaaaaagtaaaatat |
37887492 |
T |
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| Q |
101 |
cttacataa-ttcttgatcaagacatttcctctcnnnnnnnntcatggaaaagggcaggaacaagaagagaccggttaagctctccctatcggagatcga |
199 |
Q |
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| T |
37887493 |
cttacataaattcttgatcaagacatttcctctaaaaaaaaatcatggaaaagggcaggaacaagaagaggccggttaagctctccctatcggagatcga |
37887592 |
T |
|
| Q |
200 |
agcagcaaaatttctcgtacaactcagcagcggagatttcgaagaagatcaaaacagcaataacaacagcaatagcaatagctatagcgtgagtcacaac |
299 |
Q |
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| T |
37887593 |
agcagcaaaatttctcgtacaactcagcagcggagatttcgaagaagatcaaaacagcaataacaa------tagcaatagctatagcgtgagtcacaac |
37887686 |
T |
|
| Q |
300 |
aaggttgattccggtggtgatgctgtatcatcatctactgttttgtcagattctgaaagttgcgttgcaagaacaaataaaaggtatcgttacgttaata |
399 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
37887687 |
aaggttgattccggtggtgatgttgtatcatcatctactgttttgtcagattctgaaagttgctttgcaagaacaaataagaggtatcgttacgttaata |
37887786 |
T |
|
| Q |
400 |
ttgatgagttatatagagctacatctcccttgcctcctgttaaagccaggatgatcaagagaagaaagtgataactgatgaatgatgtcttaacatatat |
499 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
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| T |
37887787 |
ttgatgagttatatagagctacatctcctttgcctcctgttaaagccaggatgatcaagagaagaaaatgataaccgatgaatgatatcttaacatatat |
37887886 |
T |
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