View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_13 (Length: 466)
Name: NF3273_low_13
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 31704507 - 31704074
Alignment:
| Q |
11 |
cataggcacacatgatcttccaaatgaatttacagtgctgtaacttttcaatgtgtcacatattaaatctctttcatgattatggtatattaaggggtta |
110 |
Q |
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| T |
31704507 |
cataagcacacatgatcttccaaatgaatttacagtactgtaacttttcaatgtgtcacatattaaatctctttcatgattatggtatattaaggggtta |
31704408 |
T |
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| Q |
111 |
aagattcatgtagtctgctatcaaattggtgaattttaatcttaatgtggtataatattaatgagtccatgtcaaattctagtttgatttatctctcttt |
210 |
Q |
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| T |
31704407 |
aagattcatgtagtctgctatcaaattggtgaattttaatcttaatgtggtataat------gagtccatgtcaaattctagtttgatttatctctcttt |
31704314 |
T |
|
| Q |
211 |
gtaattgagtttgagtagnnnnnnnattacctttgtgtaaaagtctggtggagagaatcgatcgaagtgcgttggactaaaatctgaactccaaccaact |
310 |
Q |
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| T |
31704313 |
gtaattgagtttgagtagtttttttattacctttgtgtaaaagtctggtggagagaatcgatcgaagtgcgttggactaaaatctgaactccaaccaact |
31704214 |
T |
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| Q |
311 |
cctttatatacttttacctgttgttgaacatgaaaaatattcatatgtaatgaaacgaattattttcttttagtaaagtgcttaaaggtacactcacttt |
410 |
Q |
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| T |
31704213 |
cctttatatacttttacctgttgttgaacatgaaaaatattcatatgtaatgaaacgaattattttcttttagtaaagtgcttaaaggtacactcacttt |
31704114 |
T |
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| Q |
411 |
taatatctgcttcgctggcaactttcttttaggatcaaaa |
450 |
Q |
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| T |
31704113 |
taatatctgcttcgctggcaactttcttttaggatcaaaa |
31704074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 239 - 450
Target Start/End: Complemental strand, 31654099 - 31653888
Alignment:
| Q |
239 |
acctttgtgtaaaagtctggtggagagaatcgatcgaagtgcgttggactaaaatctgaactccaaccaactcctttatatacttttacctgttgttgaa |
338 |
Q |
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| T |
31654099 |
acctttgtgtaaaaatctggtggagagaatcgatcgaagtgcgttggactgaaatctgacctccagccaactcctttgtatactttgacctgttttttaa |
31654000 |
T |
|
| Q |
339 |
catg-aaaaatattcatatgtaatgaaacgaattattttcttttagtaaagtgcttaaaggtacactcacttttaatatctgcttcgctggcaactttct |
437 |
Q |
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| T |
31653999 |
catgtaaaaatattgagatgtcatgaaagaacttatttcctttt-gtaaagtgattaaaggtacactcacttttaatatctgcttcactggcaaccttct |
31653901 |
T |
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| Q |
438 |
tttaggatcaaaa |
450 |
Q |
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| T |
31653900 |
tttaggatcaaaa |
31653888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 450
Target Start/End: Original strand, 53918921 - 53919068
Alignment:
| Q |
305 |
ccaactcctttatatacttttacctgttgttgaacatgaaaaatattcatatgtaatgaaacgaa--ttattttcttttagtaaagtgcttaaaggtaca |
402 |
Q |
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||||||||||| ||||||| |||||| |||| |||||||||| ||||| ||||| ||| || || | |||| ||||||||||| || |||| |||| | |
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| T |
53918921 |
ccaactcctttgtatacttatacctgatgttaaacatgaaaactattcttatgtcatgtaaaaaacttaatttccttttagtaaaatgattaagggtata |
53919020 |
T |
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| Q |
403 |
ctcacttttaatatctgcttcgctggcaactttcttttaggatcaaaa |
450 |
Q |
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||| ||||||||||||| ||| ||| ||| || ||||||||| |||| |
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| T |
53919021 |
ctcgcttttaatatctgtttcactgacaatgtttttttaggataaaaa |
53919068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 35509880 - 35509810
Alignment:
| Q |
237 |
ttacctttgtgtaaaagtctggtggagagaatcgatcgaagtgcgttggactaaaatctgaactccaacca |
307 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||| || |||||||||||| | ||||||||| |
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| T |
35509880 |
ttacctttgtgtaaaagtctgggggagagaacatatcaaagtgtgtgggactaaaatctaagctccaacca |
35509810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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