View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_15 (Length: 464)
Name: NF3273_low_15
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 20014376 - 20014812
Alignment:
| Q |
9 |
caaaggaacagcagtagcacacaagtaccnnnnnnnnncattaacacccctacgcacaattgagcacccagtttagaacctatgccaacccataaaatct |
108 |
Q |
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| T |
20014376 |
caaaggaacagcagtagcacacaagtac-aaaaaaaaacattaacaccc-tacgcacaattgagcacccagtttagtacctatgccaacccataaaatct |
20014473 |
T |
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| Q |
109 |
ataaatctataaggtttttggtagcaaataataagaatccctttcctccttccttcnnnnnnnntaaaataagaatcccttggtgccagctcatagaata |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
20014474 |
ataaatctttaaggtttttggtagcaaataataagaatccctttcctccttccttcaaaaaa---aaaaaaagaatcccttggtgccagctcatagaata |
20014570 |
T |
|
| Q |
209 |
aacatgatgcaatctttcctttgcttaaactctattgtcaagataacactttgaaaattcaatcgtttcgctccctccaaattcgccaaattgaaaacaa |
308 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20014571 |
aacatgatgcaatatttcctttgcttaaactctattgtcaagataacactttgaaaattcaatcg-----ctccctccaaattcgccaaattgaaaacaa |
20014665 |
T |
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| Q |
309 |
taacacaatatggatgtcatacttgtcttcaaaaacctttgcaaatctttctaaaaatggcatatcacacaatatgaatgccatacttgtcttcaagaac |
408 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
20014666 |
taacacaatatggatgccatacttgtcttcaaaaacctttgcaaatctttctaaaaatgccatatcacacaatatgaatgtcatacttgtcttcaagaac |
20014765 |
T |
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| Q |
409 |
ccgttttcaaagagaattgtccatctggatcaaccgccatctccatt |
455 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20014766 |
ccgttttcaaagagaattgtccatttggatcaaccgccatctccatt |
20014812 |
T |
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