View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_18 (Length: 447)

Name: NF3273_low_18
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_18
NF3273_low_18
[»] chr6 (20 HSPs)
chr6 (101-417)||(33414472-33414788)
chr6 (12-298)||(31564838-31565117)
chr6 (126-417)||(33269445-33269740)
chr6 (101-424)||(33394949-33395274)
chr6 (194-417)||(33383929-33384156)
chr6 (101-328)||(33258187-33258416)
chr6 (264-424)||(33292918-33293078)
chr6 (99-271)||(33278972-33279139)
chr6 (101-205)||(33293090-33293194)
chr6 (1-98)||(33385314-33385412)
chr6 (144-268)||(33280358-33280482)
chr6 (4-98)||(24632066-24632161)
chr6 (12-98)||(33259583-33259670)
chr6 (3-98)||(33416152-33416248)
chr6 (1-54)||(9165228-9165281)
chr6 (375-428)||(31565107-31565160)
chr6 (101-147)||(28873045-28873091)
chr6 (12-53)||(33282241-33282282)
chr6 (12-53)||(33398042-33398083)
chr6 (12-53)||(33408952-33408993)
[»] chr2 (2 HSPs)
chr2 (101-322)||(17447760-17447982)
chr2 (293-424)||(17445607-17445741)
[»] scaffold0428 (5 HSPs)
scaffold0428 (101-328)||(2308-2537)
scaffold0428 (99-271)||(15114-15281)
scaffold0428 (144-268)||(13771-13895)
scaffold0428 (12-98)||(3704-3791)
scaffold0428 (12-53)||(11970-12011)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 101 - 417
Target Start/End: Complemental strand, 33414788 - 33414472
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 200  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  201 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 300  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  301 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagagagaagaccttgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||||||| || || ||||||||||||||    
T  33414588 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaaggaaaaagaacttgagatgcaaagagaagaccttgc 33414489  T
Q  401 ttcaaaacccaagaaca 417  Q
    |||||||||| ||||||    
T  33414488 ttcaaaacccgagaaca 33414472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 111  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  112 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  212 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 126 - 417
Target Start/End: Complemental strand, 33269740 - 33269445
Alignment:
Q  126 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 221  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  222 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 321  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T
Q  322 agtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagagagaagaccttgcttcaaaacccaagaaca 417  Q
    |||||||||||||||||||||||||  |||| | |||||||||||||||||| ||||| || || ||||||||||||||||  |||||| ||||||    
T  33269540 agtttgtatctattgaagatattcccgaaactattgtgacgaaggaaaaagatcttgagatgcaaagagaagaccttgctttgaaacccgagaaca 33269445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 101 - 424
Target Start/End: Complemental strand, 33395274 - 33394949
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 200  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  201 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggta--gaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 298  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | || |  ||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  299 agttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagagagaagacctt 398  Q
    |   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||||||||||||| || ||  ||||||||||||||    
T  33395074 ataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaaggaaaaagaactcgagatgtagagagaagacctt 33394975  T
Q  399 gcttcaaaacccaagaacagaagaga 424  Q
    ||||  ||||||  ||||| ||||||    
T  33394974 gctttgaaacccgggaacataagaga 33394949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 194 - 417
Target Start/End: Complemental strand, 33384156 - 33383929
Alignment:
Q  194 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 293  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  294 atgcaagttgctgcttg----tccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagaga 389  Q
    |||||||| ||||||||    |||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||  | ||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaaggaaaaagaacttgagttgcagaga 33383957  T
Q  390 gaagaccttgcttcaaaacccaagaaca 417  Q
    |||||||||||||  |||||| ||||||    
T  33383956 gaagaccttgctttgaaacccgagaaca 33383929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 101 - 328
Target Start/End: Complemental strand, 33258416 - 33258187
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 199  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  200 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 299  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  300 gttgctgctt-gtccacaggttcagtttgt 328  Q
    || |||  || |||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 33293078 - 33292918
Alignment:
Q  264 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacga 363  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  ||||||| |||  |||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaaccattgtcgcga 33292979  T
Q  364 aggaaaaagaacttgaaattcagagagaagaccttgcttcaaaacccaagaacagaagaga 424  Q
    |||||||||||||| | || || ||||||||||||||||  |||||| |||||| ||||||    
T  33292978 aggaaaaagaacttaagatgcaaagagaagaccttgctttgaaacccgagaacataagaga 33292918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  99 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 198  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  199 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 271  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 200  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  201 gattc 205  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 33385412 - 33385314
Alignment:
Q  1 gcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 98  Q
    ||||||||||||||||||||||||||||||||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385412 gcctgttcacctatctttgaattcttacataagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  144 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 243  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  244 actttatcggtagaagtgagaaatt 268  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 24632066 - 24632161
Alignment:
Q  4 tgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 98  Q
    |||||||| |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632066 tgttcaccaatctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 33259670 - 33259583
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 98  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259670 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 33416248 - 33416152
Alignment:
Q  3 ctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 98  Q
    ||||||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416248 ctgttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9165281 - 9165228
Alignment:
Q  1 gcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 54  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165281 gcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 31565107 - 31565160
Alignment:
Q  375 cttgaaattcagagagaagaccttgcttcaaaacccaagaacagaagagaaaaa 428  Q
    |||| ||| |||||||||||||||||||||||| || |||||||||||||||||    
T  31565107 cttgcaatgcagagagaagaccttgcttcaaaagccgagaacagaagagaaaaa 31565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 147  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtc 53  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtc 53  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtc 53  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 101 - 322
Target Start/End: Original strand, 17447760 - 17447982
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 199  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  200 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 299  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  300 gttgctgcttgtccacaggttca 322  Q
    || ||||||| ||||||||||||    
T  17447960 gtggctgcttttccacaggttca 17447982  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 424
Target Start/End: Original strand, 17445607 - 17445741
Alignment:
Q  293 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaat---tcagaga 389  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||||||| ||    |||||     
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaaggaaaaagaacttgagatgcagcagagg 17445706  T
Q  390 gaagaccttgcttcaaaacccaagaacagaagaga 424  Q
    ||||||||| |||| |||||| |||| | ||||||    
T  17445707 gaagacctttcttcgaaacccgagaatataagaga 17445741  T

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Target: scaffold0428 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 101 - 328
Target Start/End: Complemental strand, 2537 - 2308
Alignment:
Q  101 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 199  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  200 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 299  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  300 gttgctgctt-gtccacaggttcagtttgt 328  Q
    || |||  || |||||||||||||||||||    
T  2337 gtagctttttggtccacaggttcagtttgt 2308  T

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Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  99 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 198  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  199 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 271  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

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Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  144 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 243  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  244 actttatcggtagaagtgagaaatt 268  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

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Target: scaffold0428; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 98  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

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Target: scaffold0428; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  12 tatctttgaattcttacataaggtttgtaatttttaaatgtc 53  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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