View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_low_19 (Length: 444)
Name: NF3273_low_19
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 222 - 435
Target Start/End: Original strand, 35332467 - 35332680
Alignment:
| Q |
222 |
tcttggcctttcttctgtaatcttcatcttccaccatttttgaagaagcaaaaactctgaaaactagaaatggctaaagggtgatgtgaaaactgagaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35332467 |
tcttggcctttcttctgtaatcttcatcttccaccatttttgaagaagcaaaaactctgaaaactagaaatggctaaagggtgatgtgaaaactgagaag |
35332566 |
T |
|
| Q |
322 |
aacatatgtttgcattttgtaggtttgaagacggcactttgactcactcttactgtttttctcactcaggtttttgtttctggcgcgtacaataagaaca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35332567 |
aacatatgtttgcattttgtaggtttgaagacggcactttgactcactcttactgtttttctcactcaggtttttgtttctggcgcgtacaataagaaca |
35332666 |
T |
|
| Q |
422 |
aaaacaatgatgat |
435 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35332667 |
aaaacaatgatgat |
35332680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 35332243 - 35332403
Alignment:
| Q |
13 |
aaaatcaaactttttctcctcacaccccccaaaacacaacaccccattttctcatattttctcataacccaaacaga---------------aacagaac |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35332243 |
aaaatcaaactttttctcctcacaccccccaaaacacaacaccccattttctcatattttctcataacccaaacagaaacagaaacagaaacaacagaac |
35332342 |
T |
|
| Q |
98 |
aaacctttatggcttttacgcctacgcttggaaactttgtgactgatgtagcaatagtaag |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35332343 |
aaacctttatggcttttacgcctacgcttggaaactttgtgactgatgtagcaatagtaag |
35332403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University