View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_low_20 (Length: 443)
Name: NF3273_low_20
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_20 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 2794291 - 2794724
Alignment:
| Q |
10 |
gatcttactttcttttacgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794291 |
gatcttactttcttttacgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgt |
2794390 |
T |
|
| Q |
110 |
taagccacaatgtaagtagtttacaaattaactaaacaagttttgcaaagcaaacatcactactctttgagaatggaatataactagtattcttcatatt |
209 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2794391 |
taagccacaatgtaagtagtctagaaaataactaaacaagttttgcaaagcaaacatcactactctttgagaatggaatataactagtaatcttcatatt |
2794490 |
T |
|
| Q |
210 |
ctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794491 |
ctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttc |
2794590 |
T |
|
| Q |
310 |
ttgg------------aaggaaggaccttttcgtaagatggtcctcaaggaaggagaaggggacgactgtccaaatgagggagctcttgtgaaatgtaaa |
397 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794591 |
ttggaaggaaggacctaaggaaggaccttttcgtaagatggtcctcaaggaaggagaaggggacgactgtccaaatgagggagctcttgtgaaatgtaaa |
2794690 |
T |
|
| Q |
398 |
tcattgattcatgctaatatattaagatatgatg |
431 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
2794691 |
tcattgattcatgctaatatattatgatatgatg |
2794724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 2877421 - 2877002
Alignment:
| Q |
12 |
tcttactttcttttacgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgtta |
111 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2877421 |
tcttacattgttttacaccatctcataggtcatttttgtcctgcattgtcaatcgctattaagaccatgaagatcggagaaaaagtcattttaactgtta |
2877322 |
T |
|
| Q |
112 |
agccacaatgtaagtagtttacaaattaactaaacaagttttgcaaagcaaacatcactactctttgagaatggaatataactagtattcttcatattct |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||| |||||||||||| |
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|
| T |
2877321 |
agccacaatgtaagtagtctacaaattaactaaacaagttttgcaaaacaagtatcactactctttaagaacggaatataactagtaatcttcatattct |
2877222 |
T |
|
| Q |
212 |
gttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877221 |
gttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttctt |
2877122 |
T |
|
| Q |
312 |
ggaaggaaggaccttttcgtaagatggtcctcaaggaaggagaaggggacgactgtccaaatgagggagctcttgtgaaatgtaaatcattgattcatgc |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2877121 |
ggaaggaatgaccttttcgtaagatggtcctcaaggaaggagaaggagacgactgtccaaatgagggagctcttgtgaaatgtaaaccattgattcatgc |
2877022 |
T |
|
| Q |
412 |
taatatattaagatatgatg |
431 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
2877021 |
taatatattattatatgatg |
2877002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 2891891 - 2891487
Alignment:
| Q |
1 |
ttccgtgttgatcttactttcttttacgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcat |
100 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
2891891 |
ttccgggtcgatcttacattcttttacgccatctcataggtcatttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcat |
2891792 |
T |
|
| Q |
101 |
tttaactgttaagccacaatgtaagtagtttacaaattaactaaacaagttttgcaaagcaaacatcactactctttgagaatggaatataactagtatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||| | | |
|
|
| T |
2891791 |
tttaactgttaagccacaatgtaagtagtctagaaattaactaaacaagttttgcaaaacaagcatcactactctttgagaacggaacataactagaaat |
2891692 |
T |
|
| Q |
201 |
cttcatattctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcga |
300 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
|
|
| T |
2891691 |
cctcgtattctgttatagatggatttggtgacaagggcaggccagctcaccatgatgaagcttcagttccacctaacgcaacattgcagatcactctcag |
2891592 |
T |
|
| Q |
301 |
gtttgtttcttggaaggaaggaccttttcgtaagatggtcctcaaggaaggagaagg---ggacg-actgtccaaatgagggagctcttgtgaaatgtaa |
396 |
Q |
| |
|
||| ||||||||||| ||| | |||||| |||| | | ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
2891591 |
gttagtttcttggaacaaagcaacttttcataagcagcttctcaaggaaggagaaggagctgacgtaccgtccaaatgagggagctcttgtgaaatgtaa |
2891492 |
T |
|
| Q |
397 |
atcat |
401 |
Q |
| |
|
||||| |
|
|
| T |
2891491 |
atcat |
2891487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 401
Target Start/End: Original strand, 3143412 - 3143775
Alignment:
| Q |
42 |
catttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtttacaaattaac |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
3143412 |
catttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatttaagtagtctagaaattaac |
3143511 |
T |
|
| Q |
142 |
taaacaagttttgcaaagcaaacatcactactctttgagaatggaatataactagtattcttcatattctgttatagatggatttggtgacaagggcaag |
241 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||| | || || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
3143512 |
taaacaagttttgcaaaacaagcatcactactctttgagaacggaacataactagaaatcctcgtattctgttatagatggatttggtgacaagggcagg |
3143611 |
T |
|
| Q |
242 |
ccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttcttggaaggaaggaccttttcgtaagatggtcc |
341 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||| ||||||||| | ||| | |||||| |||| | | | |
|
|
| T |
3143612 |
ccagctcaccatgatgaagcttcagttccacctaacgcaacattgcagatcactctcaggttagtttcttggtacaaagcaacttttcataagcagcttc |
3143711 |
T |
|
| Q |
342 |
tcaaggaaggagaaggggacg----actgtccaaatgagggagctcttgtgaaatgtaaatcat |
401 |
Q |
| |
|
|||||||||||||||| | | || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3143712 |
tcaaggaaggagaaggagctgatgtaccgtccaaatgagggagctcttgtgaaatgtaaatcat |
3143775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 8627338 - 8627457
Alignment:
| Q |
200 |
tcttcatattctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaa---cattgcagattattc |
296 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||| ||| |||||||||||| |||||||||||||||||||||| |||| | |||||||||| || |
|
|
| T |
8627338 |
tcttcatattgtgttatagatggatttcgttacatgggaaagccagctcacggcaatgaaggttcagttccacctaatgcaacgtcgttgcagattactc |
8627437 |
T |
|
| Q |
297 |
tcgagtttgtttcttggaag |
316 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
8627438 |
ttgagttggtttcttggaag |
8627457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 3495796 - 3495686
Alignment:
| Q |
206 |
tattctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttg |
305 |
Q |
| |
|
|||| ||| ||||||||||||| ||| || ||||| |||||||| |||||||||| ||||||||||||| ||||||||| |||||| || ||||| | |
|
|
| T |
3495796 |
tattgtgtgatagatggatttgatgagaaaggcaaaccagctcatggtgatgaaggtgcagttccacctaatgcaacattggagattacccttgagttag |
3495697 |
T |
|
| Q |
306 |
tttcttggaag |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
3495696 |
tttcttggaag |
3495686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 14389369 - 14389259
Alignment:
| Q |
206 |
tattctgttatagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttg |
305 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||| |||||||| ||||||| | ||||||||||||| ||||||||| |||||| || ||||| | |
|
|
| T |
14389369 |
tattgtgtaatagatggatttggtgtgaagggcaaaccagctcatggtgatgaaattgcagttccacctaatgcaacattgaagattaaccttgagttgg |
14389270 |
T |
|
| Q |
306 |
tttcttggaag |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
14389269 |
tttcttggaag |
14389259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 3495972 - 3495884
Alignment:
| Q |
38 |
aggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagt |
126 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||| ||||| ||||| || || ||||| |||||||||||||||| |
|
|
| T |
3495972 |
aggttatttttgtcctgcattgccaaaggctgttaagactatgaagaagggagagaaagtgatcttgactgtgaagccacaatgtaagt |
3495884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 8627055 - 8627165
Alignment:
| Q |
27 |
cgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagt |
126 |
Q |
| |
|
|||||| | |||||||||||||||| |||||| |||| |||||||| || ||||||| ||||| |||| ||||| ||||| ||||| ||| |||||| |
|
|
| T |
8627055 |
cgccatgtgataggtcatttttgtcttgcattgtcaaaggctgttaaaaccatgaagaagggagagaaagcgattttgactgtgaagccccaacgtaagt |
8627154 |
T |
|
| Q |
127 |
agtttacaaat |
137 |
Q |
| |
|
|| ||||||| |
|
|
| T |
8627155 |
tgtctacaaat |
8627165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 3506285 - 3506234
Alignment:
| Q |
186 |
aatataactagtattcttcatattctgttatagatggatttggtgacaaggg |
237 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
3506285 |
aatataactagtaatcttgatattgtgttatagatggacttggtgagaaggg |
3506234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 3495639 - 3495567
Alignment:
| Q |
342 |
tcaaggaaggagaaggggacgactgtccaaatgagggagctcttgtgaaatgtaaatcattgattcatgctaat |
415 |
Q |
| |
|
|||||||||||||||| | || |||||||||| |||||| |||| |||||||||||| ||||| |||||||| |
|
|
| T |
3495639 |
tcaaggaaggagaaggatatgagcgtccaaatgatggagctgttgtaaaatgtaaatca-tgattgatgctaat |
3495567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 3500720 - 3500684
Alignment:
| Q |
365 |
tgtccaaatgagggagctcttgtgaaatgtaaatcat |
401 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |
|
|
| T |
3500720 |
tgtccaaatgagggatctgttgtgaaatgtaaatcat |
3500684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 18848318 - 18848217
Alignment:
| Q |
215 |
atagatggatttggtgacaagggcaagccagctcaccatgatgaaggttcagttccacctaacgcaacattgcagattattctcgagtttgtttcttgga |
314 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || |||||||||| |||||||||| || ||| || ||||||||| || ||||| |||||||||| |
|
|
| T |
18848318 |
atagatggatttggtgagaaggggaagccagcgcatggtgatgaaggtgcagttccaccaaatgcatcactgcagattacacttgagttggtttcttgga |
18848219 |
T |
|
| Q |
315 |
ag |
316 |
Q |
| |
|
|| |
|
|
| T |
18848218 |
ag |
18848217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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