View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_21 (Length: 434)
Name: NF3273_low_21
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 43696692 - 43696295
Alignment:
| Q |
10 |
aagaatatgtatatagatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagccgga |
109 |
Q |
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| T |
43696692 |
aagaatatgtatatagatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagctgga |
43696593 |
T |
|
| Q |
110 |
gtatattattattaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatca |
209 |
Q |
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| T |
43696592 |
gtatattattattaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatca |
43696493 |
T |
|
| Q |
210 |
acaggtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696492 |
acaggtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcatt |
43696393 |
T |
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| Q |
310 |
aagttaattttatatccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtataata |
407 |
Q |
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| T |
43696392 |
aagttaattttatatccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtataata |
43696295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 32214076 - 32214108
Alignment:
| Q |
279 |
ttgcatgcttaacattctaaattatgtcattaa |
311 |
Q |
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| T |
32214076 |
ttgcatgcttaacattttaaattatgtcattaa |
32214108 |
T |
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