View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_22 (Length: 417)

Name: NF3273_low_22
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_22
NF3273_low_22
[»] chr1 (22 HSPs)
chr1 (28-345)||(3265301-3265619)
chr1 (51-235)||(1153672-1153855)
chr1 (20-234)||(1240394-1240612)
chr1 (33-207)||(45385209-45385385)
chr1 (341-403)||(3263696-3263761)
chr1 (51-169)||(8246730-8246851)
chr1 (92-213)||(35405375-35405496)
chr1 (20-207)||(23897875-23898057)
chr1 (54-172)||(33735760-33735878)
chr1 (53-213)||(35204188-35204344)
chr1 (53-142)||(16141556-16141645)
chr1 (101-260)||(29062288-29062447)
chr1 (116-213)||(22667164-22667261)
chr1 (54-123)||(29664192-29664261)
chr1 (112-213)||(49762420-49762520)
chr1 (56-104)||(30717893-30717941)
chr1 (20-76)||(35405291-35405346)
chr1 (33-80)||(40869-40916)
chr1 (20-83)||(23935155-23935218)
chr1 (149-233)||(36382974-36383059)
chr1 (79-183)||(15103046-15103150)
chr1 (188-228)||(30718216-30718256)
[»] chr6 (21 HSPs)
chr6 (24-251)||(12174291-12174518)
chr6 (51-236)||(9815619-9815803)
chr6 (53-234)||(31787815-31787993)
chr6 (31-213)||(35121917-35122102)
chr6 (27-213)||(10668850-10669033)
chr6 (46-260)||(34573110-34573324)
chr6 (54-213)||(34540829-34540988)
chr6 (112-213)||(33344880-33344981)
chr6 (112-213)||(34329792-34329893)
chr6 (74-213)||(31153606-31153745)
chr6 (51-233)||(33607007-33607192)
chr6 (32-107)||(34969375-34969450)
chr6 (29-91)||(6549785-6549847)
chr6 (51-99)||(6274014-6274062)
chr6 (20-80)||(33344763-33344823)
chr6 (29-97)||(4337976-4338044)
chr6 (154-258)||(35067103-35067207)
chr6 (20-78)||(13229274-13229332)
chr6 (148-214)||(18991742-18991808)
chr6 (133-206)||(34969848-34969920)
chr6 (26-120)||(33871074-33871164)
[»] chr5 (14 HSPs)
chr5 (26-213)||(3193491-3193678)
chr5 (53-213)||(32257654-32257814)
chr5 (53-182)||(502805-502931)
chr5 (53-232)||(16569252-16569429)
chr5 (29-252)||(20870610-20870827)
chr5 (31-186)||(12263642-12263799)
chr5 (53-186)||(16570492-16570625)
chr5 (21-105)||(7887264-7887348)
chr5 (53-183)||(36161044-36161170)
chr5 (53-260)||(39542410-39542615)
chr5 (92-236)||(7886560-7886702)
chr5 (54-233)||(8934060-8934240)
chr5 (53-183)||(3596911-3597041)
chr5 (51-97)||(10325717-10325763)
[»] chr8 (20 HSPs)
chr8 (28-213)||(13580327-13580512)
chr8 (32-183)||(26835593-26835744)
chr8 (92-214)||(13236221-13236343)
chr8 (27-171)||(22930295-22930439)
chr8 (20-152)||(34141991-34142123)
chr8 (53-213)||(9191200-9191351)
chr8 (43-234)||(31383464-31383655)
chr8 (20-169)||(22486608-22486756)
chr8 (51-251)||(4350596-4350802)
chr8 (101-228)||(31277936-31278064)
chr8 (51-121)||(28376655-28376725)
chr8 (128-251)||(24606847-24606969)
chr8 (90-213)||(43872544-43872667)
chr8 (101-235)||(41849429-41849562)
chr8 (54-102)||(12181824-12181872)
chr8 (54-102)||(12426252-12426300)
chr8 (23-83)||(13236133-13236194)
chr8 (101-213)||(39295475-39295586)
chr8 (55-97)||(21348439-21348481)
chr8 (92-213)||(26801891-26802011)
[»] chr4 (30 HSPs)
chr4 (26-213)||(23870020-23870206)
chr4 (26-213)||(2113812-2113999)
chr4 (54-182)||(36071557-36071685)
chr4 (54-229)||(12320404-12320580)
chr4 (54-200)||(7102144-7102289)
chr4 (53-235)||(3643092-3643273)
chr4 (51-184)||(29118469-29118603)
chr4 (51-234)||(7853293-7853475)
chr4 (55-229)||(35372063-35372230)
chr4 (53-186)||(4596455-4596588)
chr4 (51-213)||(5627494-5627651)
chr4 (59-251)||(43515787-43515980)
chr4 (127-213)||(48653742-48653828)
chr4 (53-232)||(53178749-53178926)
chr4 (51-234)||(25779590-25779773)
chr4 (164-258)||(8732999-8733093)
chr4 (53-171)||(15986881-15986999)
chr4 (38-108)||(47059675-47059745)
chr4 (38-108)||(47082057-47082127)
chr4 (53-124)||(12167050-12167121)
chr4 (92-214)||(20811475-20811597)
chr4 (161-263)||(37226342-37226444)
chr4 (75-125)||(40807927-40807977)
chr4 (46-97)||(38087652-38087703)
chr4 (33-79)||(8733167-8733213)
chr4 (51-125)||(55147883-55147957)
chr4 (31-72)||(48653269-48653310)
chr4 (114-186)||(40807842-40807914)
chr4 (160-236)||(51002624-51002700)
chr4 (113-213)||(55147639-55147739)
[»] chr7 (26 HSPs)
chr7 (28-212)||(35812589-35812774)
chr7 (53-213)||(26914312-26914472)
chr7 (55-213)||(3940621-3940778)
chr7 (24-214)||(13431633-13431822)
chr7 (45-251)||(40351700-40351905)
chr7 (54-260)||(21828162-21828367)
chr7 (60-211)||(12177813-12177965)
chr7 (51-213)||(33480460-33480621)
chr7 (92-213)||(3351119-3351240)
chr7 (51-215)||(9429304-9429467)
chr7 (65-184)||(42335943-42336062)
chr7 (54-184)||(22318662-22318791)
chr7 (92-213)||(26448411-26448533)
chr7 (31-183)||(21129326-21129478)
chr7 (71-213)||(26912345-26912486)
chr7 (20-97)||(30095845-30095922)
chr7 (51-110)||(21292802-21292861)
chr7 (53-213)||(36066113-36066271)
chr7 (92-213)||(15133276-15133397)
chr7 (53-104)||(31329665-31329716)
chr7 (54-125)||(32982336-32982407)
chr7 (189-232)||(32982464-32982507)
chr7 (51-96)||(15134537-15134582)
chr7 (51-80)||(37996507-37996536)
chr7 (95-175)||(36572901-36572980)
chr7 (154-186)||(37996570-37996602)
[»] chr3 (19 HSPs)
chr3 (28-183)||(33510096-33510252)
chr3 (64-234)||(33682610-33682780)
chr3 (51-234)||(168635-168814)
chr3 (54-216)||(15670919-15671078)
chr3 (28-213)||(8266563-8266749)
chr3 (53-174)||(54417030-54417151)
chr3 (46-186)||(11383584-11383726)
chr3 (86-260)||(27538709-27538881)
chr3 (51-234)||(2758073-2758258)
chr3 (112-213)||(11365106-11365207)
chr3 (51-233)||(39838467-39838645)
chr3 (53-213)||(17713276-17713431)
chr3 (53-213)||(19014505-19014660)
chr3 (53-103)||(27541147-27541197)
chr3 (79-147)||(7741724-7741792)
chr3 (99-213)||(47000835-47000948)
chr3 (112-213)||(33290758-33290858)
chr3 (53-97)||(18257971-18258015)
chr3 (56-104)||(42417929-42417977)
[»] scaffold0777 (1 HSPs)
scaffold0777 (51-213)||(5844-6005)
[»] chr2 (27 HSPs)
chr2 (53-195)||(5163792-5163934)
chr2 (92-213)||(36186579-36186700)
chr2 (23-186)||(30257776-30257940)
chr2 (51-171)||(40876936-40877056)
chr2 (19-234)||(15925443-15925661)
chr2 (54-251)||(36506809-36507000)
chr2 (86-213)||(16646928-16647055)
chr2 (55-214)||(38561844-38562002)
chr2 (53-184)||(28556603-28556734)
chr2 (64-213)||(38134084-38134230)
chr2 (96-229)||(2886978-2887111)
chr2 (21-169)||(17271273-17271424)
chr2 (53-236)||(18197338-18197520)
chr2 (56-182)||(18829973-18830100)
chr2 (128-233)||(38608294-38608400)
chr2 (92-213)||(37912332-37912453)
chr2 (51-95)||(28226833-28226877)
chr2 (54-109)||(38035390-38035445)
chr2 (51-97)||(4206647-4206693)
chr2 (53-123)||(6621319-6621389)
chr2 (20-74)||(16647942-16647996)
chr2 (47-81)||(34345892-34345926)
chr2 (60-194)||(35280919-35281055)
chr2 (168-250)||(40705853-40705935)
chr2 (94-183)||(26350440-26350528)
chr2 (112-196)||(4206325-4206409)
chr2 (20-80)||(37911399-37911459)
[»] scaffold0531 (1 HSPs)
scaffold0531 (51-165)||(9699-9813)
[»] scaffold0527 (2 HSPs)
scaffold0527 (128-213)||(1720-1805)
scaffold0527 (128-213)||(9783-9868)
[»] scaffold1173 (1 HSPs)
scaffold1173 (128-212)||(403-487)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 3265619 - 3265301
Alignment:
Q  28 cagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctta 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  3265619 cagggcaccattttataaagggaaccaaaattattatttttacttaatagttagtattaaatagatatatttctttttaactccctttgat-aattctta 3265521  T
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa--tagtacaacttt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  || |||||||||    
T  3265520 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataattaaaatgtaatacaacttt 3265421  T
Q  226 attgattcgcctaagacactaaaaattttaagaccaacggtcatgcaagcctatctaattttactttacttgttctttttgtttcaattggatgttatag 325  Q
    ||||||||| |||||||||||||||| |||||||| ||  | ||  | ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  3265420 attgattcgtctaagacactaaaaatcttaagaccgactctaatcgaggcctatctatttttactttacttgttctttttgtttcagttggatgttatag 3265321  T
Q  326 cttttatttgtaaatcttag 345  Q
    ||||||||||||||||||||    
T  3265320 cttttatttgtaaatcttag 3265301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 1153855 - 1153672
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||  | |||||||||||||||||||||    
T  1153855 accacaattattatttttatttagtagttagtattaaatagttatatttgtttttaactcc-tttaattaattctattaaaaatatgttttaagagaact 1153757  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgc 235  Q
    || ||| ||||| ||||||||| ||||||||| ||| ||||||| | ||||| ||||||||||  ||||||||||||||||||||    
T  1153756 ttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaaacggtacaactttattgattcgc 1153672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 1240394 - 1240612
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt 119  Q
    ||||| |||||| ||||||||| | | ||| || |||||||||||||||||||||||||||||| || ||| |||||||| |||||||  | ||||||||    
T  1240394 cggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagtagttagtactatataaatatatttctttttaatccgctttgatt 1240493  T
Q  120 aattcttatgaaaatatgtttta----agagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaata 215  Q
    ||||||  ||||||||| ||||     |||||||||  ||||| ||||||||||||| ||||||||||||| ||||||||| ||  | ||||||||||      
T  1240494 aattctattgaaaatatatttttttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagg 1240593  T
Q  216 gtacaactttattgattcg 234  Q
    | |||| ||||||| ||||    
T  1240594 gcacaattttattgtttcg 1240612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 45385385 - 45385209
Alignment:
Q  33 caccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt----aattcttat 128  Q
    ||||||||||||| ||| | ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||| |||    ||| ||  |    
T  45385385 caccattttataaggggtatcaaaattattatttttatttagtagtttgtattaaatggatatatttctttttaactccctttaattaataaatactatt 45385286  T
Q  129 gaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataa 207  Q
    || |||||||||  ||||||| || ||| ||||||||||||||| |||||||||| || || |||||| ||| ||||||    
T  45385285 gataatatgttt--agagaaccttgattttcaatgaatcttttgcaacaaaaaatacaagaggaaaaatatttgaataa 45385209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 3263761 - 3263696
Alignment:
Q  341 cttagacttgagtatttcttatactcattgt---atgtttctctttcgttggtctatatttcatct 403  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  3263761 cttagacttgagtaattcttatactcattgttgtatgtttctctttcgttggtctatatttcatct 3263696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 8246851 - 8246730
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaata---tgttttaagaga 147  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||| |   |||||||||||||  ||||||||   | |||| | |||    
T  8246851 accaaaattattatttttacttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattgaaaatatattttttttataga 8246752  T
Q  148 acttttattatcaatgaatctt 169  Q
    ||||| ||||| ||||||||||    
T  8246751 actttaattataaatgaatctt 8246730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 35405375 - 35405496
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| ||||||| || |||||||||||| |  | |||| || |||| ||| |||||| ||||  ||||||| ||||| ||||||||||||| ||||    
T  35405375 atatatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaatgcaagaag 35405474  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    ||||| ||| ||||||||||||    
T  35405475 aaaaatatttgaataattaaaa 35405496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 23898057 - 23897875
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt 119  Q
    ||||| ||||||| |||||||| | | ||| ||||||||||| |||||||||||||||||||||      | |||||||  ||||||| |  ||||||||    
T  23898057 cggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagttagta------atatatattcctttttaatttgctttgatt 23897964  T
Q  120 aattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaac--aaaaaatgcacgaagaaaaacattcgaataa 207  Q
    ||||| |||  ||| || |||| ||| |||||| ||||| ||||||| ||||| |||  |||||||||| ||||||||| ||| ||||||    
T  23897963 aattc-tatttaaaaatatttttagataactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaatatttgaataa 23897875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 33735878 - 33735760
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    |||||||||| |||||  ||||||||||||||  ||| |||||||| ||||||| |   ||||||||||| |  ||||||||| |||| ||| ||||||     
T  33735878 aaaattattaattttatctagtagttagtattgtataaatatatttctttttaatttggtttgattaattatattgaaaatatatttttagacaactttg 33735779  T
Q  154 attatcaatgaatcttttg 172  Q
    ||||| |||||||||||||    
T  33735778 attataaatgaatcttttg 33735760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 35204344 - 35204188
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||   ||||| |  |||||||||||| |  ||| || || |||| |||||| |||    
T  35204344 caaaattattatttttacttagtaattagtattatataaaaatattt---tttaaattgctttgattaattatattgacaa-atatttttagagaatttt 35204249  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||| ||||| || ||||| | || ||| ||||||||| ||||||||||||    
T  35204248 gattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataattaaaa 35204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 16141645 - 16141556
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgtttta 142  Q
    |||| |||||||| ||| |||||||||||||||| ||| | |||||| |||||||||  ||||||| |||||| |||||||||| |||||    
T  16141645 caaatttattattgttatttagtagttagtattatatataaatatttgtttttaactttctttgatcaattctaatgaaaatatatttta 16141556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 29062447 - 29062288
Alignment:
Q  101 tttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacatt 200  Q
    ||||||| || ||| |||||||||   | ||||||| || | |||||||||||||||| ||| ||||||||| |||||||||| || ||||||| | |||    
T  29062447 tttttaattcacttggattaattcaatttaaaatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatatt 29062348  T
Q  201 cgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattttaagacc 260  Q
     || ||||||||| || |  | ||||||| ||||  ||| |||| |||||| ||||||||    
T  29062347 ggagtaattaaaagagcattattttattgtttcgtttaaaacaccaaaaatcttaagacc 29062288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 22667261 - 22667164
Alignment:
Q  116 gattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||||||  ||||||| | ||||  || |||||| ||||| ||||||| ||||| || |||||||||| ||||||||| ||| ||||||||||||    
T  22667261 gattaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaa 22667164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 29664192 - 29664261
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaatt 123  Q
    ||||||||||||||||||||||| |||||| || |||| ||||||| ||||||| ||  |||||||||||    
T  29664192 aaaattattatttttacttagtaattagtactatataggtatatttctttttaattcgttttgattaatt 29664261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 49762520 - 49762420
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    ||||||||||||||  ||||||||| |||| |||||||||| ||||| ||||| | || |||||||||||||  | |||| |||| ||| ||||||||||    
T  49762520 ctttgattaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaag-aaaatattagaataattaa 49762422  T
Q  212 aa 213  Q
    ||    
T  49762421 aa 49762420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 30717893 - 30717941
Alignment:
Q  56 aattattatttttacttagtagttagtattaaatagatatatttatttt 104  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||| ||||    
T  30717893 aattattatttttacttagtaattaatattatatagatatatttttttt 30717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 35405291 - 35405346
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagta 76  Q
    ||||| |||||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  35405291 cggcagcccagggcaccattttttag-gggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 40916 - 40869
Alignment:
Q  33 caccattttataaagggaaccaaaattattatttttacttagtagtta 80  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||    
T  40916 caccattttattaggggcaccaaaattattatttttactttgtagtta 40869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 23935155 - 23935218
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagta 83  Q
    ||||| |||||||||||||||| | | ||  ||||||||||  |||||||||||||||||||||    
T  23935155 cggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagttagta 23935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 36382974 - 36383059
Alignment:
Q  149 cttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaata-gtacaactttattgattc 233  Q
    |||| ||||| ||||||| |||   ||||||||||| | |||||||||||||| ||||||||||| | | ||||||||||| ||||    
T  36382974 ctttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaaaaggcacaactttattaattc 36383059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 15103150 - 15103046
Alignment:
Q  79 tagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaa 178  Q
    ||||| || |||||||||||| ||||||  |   |||||||||||||  ||||   || |||| |||||||||| ||||| |||||||||| || |||||    
T  15103150 tagtactatatagatatatttctttttactttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaacaa 15103051  T
Q  179 aaaat 183  Q
    |||||    
T  15103050 aaaat 15103046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 30718216 - 30718256
Alignment:
Q  188 gaagaaaaacattcgaataattaaaatagtacaactttatt 228  Q
    ||||||| |||||| |||||||||||| |||||||||||||    
T  30718216 gaagaaagacattcaaataattaaaattgtacaactttatt 30718256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 12174291 - 12174518
Alignment:
Q  24 aacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaatt 123  Q
    |||| ||||||||||||| |||  || ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||  |||||||||||    
T  12174291 aacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaatt 12174390  T
Q  124 cttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaact 223  Q
     |  | ||||||| |||| |||||||||| ||| | |||||||||||||||||||||| |||| |||| |||| |||  ||||| ||||| |  |||| |    
T  12174391 atattaaaaatatatttttagagaactttaattgtaaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaatt 12174490  T
Q  224 ttattgattcgcctaagacactaaaaat 251  Q
    |||||| |||| | | ||||| ||||||    
T  12174491 ttattgtttcgtccatgacaccaaaaat 12174518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 9815803 - 9815619
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||||||||||||||||||||||||||| || || |||||||||||| ||||||| || |||||||||| | |  ||||||||| |||| ||| ||||    
T  9815803 accaaaattattatttttacttagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaact 9815704  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcc 236  Q
     | ||||| ||||| | ||||||||||||||||||| |||||| || ||| ||||||||||||  | |||| ||||||| ||||||    
T  9815703 atgattataaatgagt-ttttgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttattgtttcgcc 9815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 31787815 - 31787993
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||  ||||||||| |||  ||| ||||||    
T  31787815 caaaattattatttgtacttaatagttagtattaagtagatatatttatttttaattcgctttgattaattctattgaaaatatatttgtagataacttt 31787914  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
     ||||| ||||||| ||||| ||| ||||||||| ||  ||||| |||  |||||||||||  |||||| ||||||| ||||    
T  31787915 aattataaatgaatattttgcaactaaaaatgcaaga--aaaaatattgaaataattaaaaaggtacaa-tttattgtttcg 31787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 35122102 - 35121917
Alignment:
Q  31 ggcaccattttataaagggaaccaaaattattatttttacttagtagttag---tat-taaatagatatatttatttttaactccctttgattaattctt 126  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||    ||| || ||| |||||| ||| ||||| || ||||||||||||||     
T  35122102 ggcaccatttaattaggggcaccaaaattattatttttacttagtagttatatatatatatatatatatatatatatttaattcgctttgattaattcta 35122003  T
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||||||| |||| ||| |||||| ||||| ||||||| ||||| ||| ||||||||  ||||||||| ||| ||||||||||||    
T  35122002 ttgaaaatatatttttagataactttgattataaatgaatattttgcaac-aaaaatgctagaagaaaaatatttgaataattaaaa 35121917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 10669033 - 10668850
Alignment:
Q  27 ccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctt 126  Q
    ||||||||||||||| | | ||| ||||||||||||||||||||||| |||||||||||| |||||||||| | |||| || | | ||||||||||| |     
T  10669033 ccagggcaccatttttttaggggcaccaaaattattatttttacttattagttagtattatatagatatatatcttttgaa-ttcatttgattaattata 10668935  T
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||||||| |||| ||| ||| || ||||| ||||||||| |||  ||||||||| ||  |||||||| ||| ||||||||||||    
T  10668934 ttgaaaatat-tttttaga-aacgttgattataaatgaatctattgagacaaaaaatccaaaaagaaaaatattagaataattaaaa 10668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 34573324 - 34573110
Alignment:
Q  46 agggaaccaaaattattatttttacttagtagttagtattaaatag--atatatttatttttaactccctttgattaattcttatgaaaatatgttttaa 143  Q
    |||| ||||||||||||||||||| |||||||||| ||||| ||||  |||||||| ||||||| ||  ||||||||||| |  ||||||||| |||| |    
T  34573324 agggtaccaaaattattatttttatttagtagttaatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatattttta 34573225  T
Q  144 gagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagaca 243  Q
     |||||||| ||||| |||||||||||  ||| ||| ||||||  |||||||| ||| ||||| || |||  | |||| ||||||| || | ||| ||||    
T  34573224 aagaactttgattataaatgaatcttt--taaaaaagaatgcaaaaagaaaaatatttgaatattttaaagggcacaattttattgttttgtctaggaca 34573127  T
Q  244 ctaaaaattttaagacc 260  Q
      |||||| ||||||||    
T  34573126 tcaaaaatcttaagacc 34573110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 34540988 - 34540829
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    ||||||||||||||||||||||| ||| || || |||||||||||| || |||||||  |||||||| ||||  ||||||||| |||| | | ||  ||     
T  34540988 aaaattattatttttacttagtaattaatactatatagatatatttcttattaactcgttttgattagttctattgaaaatatatttttaaataatcttg 34540889  T
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||| ||| ||| ||||| |||||||||| || ||||||| |||||| ||| |||||||    
T  34540888 attatgaataaattttttgcaacaaaaaatacatgaagaaatacattcaaatgattaaaa 34540829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 33344880 - 33344981
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    ||||||||||||||  ||||||||| |||| ||| |||||| ||||| ||||||| ||||| ||||||||||||  ||||||||| ||| ||||||||||    
T  33344880 ctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaa 33344979  T
Q  212 aa 213  Q
    ||    
T  33344980 aa 33344981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 34329893 - 34329792
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    ||||||||||||||  ||||||||| |||| ||||||||||  |||| |||  |||||||| ||||||||||||| ||||||||| ||| ||||||||||    
T  34329893 ctttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaa 34329794  T
Q  212 aa 213  Q
    ||    
T  34329793 aa 34329792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 31153745 - 31153606
Alignment:
Q  74 gtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgt 173  Q
    ||||| |||| || ||||||||||||| |||||| ||| ||| ||||||| |  |||||||||||||| | | |||||| || || |||||||||||||     
T  31153745 gtagtcagtactatatagatatatttaattttaaatccttttaattaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgc 31153646  T
Q  174 aacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    || |||||||||| ||  ||||||| || |||||||||||    
T  31153645 aataaaaaatgcaagagaaaaaacactcaaataattaaaa 31153606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 33607192 - 33607007
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||||||||| ||| |||||| || || ||| |||  |||||||| |||||  |||||||||||||  ||||||||| |||||| | | ||    
T  33607192 accaaaattattatttttatttaatagttaatagtatatacataattttattttcaactcattttgattaattctattgaaaatattttttaaaaaacct 33607093  T
Q  151 t--tta-ttatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattc 233  Q
    |  ||| |||| |||||| |||||| ||| ||| ||  ||||||||||| ||| |||||||||||| || |||| ||||| |||||    
T  33607092 taattagttatgaatgaaccttttgcaactaaagatatacgaagaaaaatatttgaataattaaaagagaacaagtttatcgattc 33607007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 34969375 - 34969450
Alignment:
Q  32 gcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaa 107  Q
    |||| ||||| | ||||| | ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  34969375 gcactatttttttaagggcatcaaaattattatttttacttagtagttggtactatatagatatatttatttttaa 34969450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 6549847 - 6549785
Alignment:
Q  29 agggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatag 91  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| ||| ||||| |||||||||||    
T  6549847 agggcaccattttataatgggcaccaagattattatttttatttaatagtttgtattaaatag 6549785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 6274062 - 6274014
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatattt 99  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  6274062 accaaaattattattttaacttagtagttagtattatatacatatattt 6274014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 33344763 - 33344823
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagtta 80  Q
    ||||| |||| |||||||||| || | ||| ||||||||||||||||||||||||||||||    
T  33344763 cggcagcccaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 4338044 - 4337976
Alignment:
Q  29 agggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    ||||||||||| | | | ||| ||||||||||||| ||||||||||||||||||| || ||| ||||||    
T  4338044 agggcaccattattttatgggcaccaaaattattacttttacttagtagttagtactatatatatatat 4337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 35067103 - 35067207
Alignment:
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattt 253  Q
    ||||| |||||||||| || || |||||||| | ||| ||| | |||| |||||||||||||  | || |||||||||||||| ||||| | |||||| |    
T  35067103 attatgaatgaatcttatgcaagaaaaaatgtaagaaaaaagatattcaaataattaaaataacataattttattgattcgccaaagacgccaaaaatct 35067202  T
Q  254 taaga 258  Q
    |||||    
T  35067203 taaga 35067207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 13229274 - 13229332
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagt 78  Q
    ||||| |||| ||||||||||| | |  || ||||||||||||||||||||||||||||    
T  13229274 cggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttagtagt 13229332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 18991808 - 18991742
Alignment:
Q  148 acttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaat 214  Q
    ||||| ||||| |||||||||| || ||||||||||||| ||||||||| |||  |||| |||||||    
T  18991808 actttaattataaatgaatcttgtgcaacaaaaaatgcaagaagaaaaatattgaaatagttaaaat 18991742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 34969848 - 34969920
Alignment:
Q  133 atatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaata 206  Q
    |||| |||||||| |||||| | ||| ||||||||||||  ||||||||||||| ||||||||| ||| |||||    
T  34969848 atattttttaaga-aactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaata 34969920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33871164 - 33871074
Alignment:
Q  26 cccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatta 120  Q
    |||| |||||| ||| ||||  || |||||||||||||||||||||   ||||||||| || ||| |||||||| || ||||||| |||||||||    
T  33871164 cccatggcaccttttcataagaggcaccaaaattattatttttact---tagttagta-tacatacatatatttcttcttaactcgctttgatta 33871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 3193678 - 3193491
Alignment:
Q  26 cccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    ||||||||||||||||   ||||| |||||||||||||||||||  |||||| ||||| || |||||||||||| ||||||| |  |||||| ||||| |    
T  3193678 cccagggcaccattttcataagggcaccaaaattattatttttatgtagtaggtagtactacatagatatatttctttttaaattgctttgaataattat 3193579  T
Q  126 tatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
      |||||||||||||| | |||||||| ||||| ||||||||||||| || |||||||||| ||||||| |||||| |||||||||||    
T  3193578 attgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaa 3193491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 32257814 - 32257654
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |  |||||||||||| |  |||||||||  ||| ||||||||||    
T  32257814 caaaataattatttttacttagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatacttttagagaacttt 32257715  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||| || |||||||||||||||| ||| ||||| ||| ||||||||||||    
T  32257714 gattataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaa 32257654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 502805 - 502931
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  |||||||||||||  ||||||||| |||| ||||||||||    
T  502805 caaaattattatttttacttag-agttagtattatatagatatatttctttttaactc--tttgattaattctattgaaaatatatttttagagaacttt 502901  T
Q  153 tattatcaatgaatcttttgtaacaaaaaa 182  Q
     ||||| ||||||||||||| || ||||||    
T  502902 gattatgaatgaatcttttgcaaaaaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 16569429 - 16569252
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||||||| || ||||| |||| ||||||| |||||||||||| ||  ||||||||  |||||||||||||| ||| ||| ||    
T  16569429 caaaattattatttttacttagtaggtaatattatataggtatatttctttttaactcccatttgttaattctattgaaaatatgtttttagaaaacctt 16569330  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgatt 232  Q
     | ||| ||| ||||| ||| |  |||||||||| ||||||| |||||  ||||||| |||  |||||||||||||||||    
T  16569329 gaatataaataaatctattgca--aaaaaatgcaagaagaaagacattgcaataatttaaacggtacaactttattgatt 16569252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 20870610 - 20870827
Alignment:
Q  29 agggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttat 128  Q
    ||||||||||||| | ||| | | ||||||||||||||||| ||||||||||||    | || |||||||| ||||||| ||||||||||||||| |  |    
T  20870610 agggcaccatttttttaagagtatcaaaattattatttttatttagtagttagt----actatatatatttctttttaattccctttgattaattttatt 20870705  T
Q  129 gaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttatt 228  Q
    || ||||| |||| ||| |||||| ||||| ||||||| || || ||||||||||||| ||| ||||| |||  |||||||||||| |||||| ||||||    
T  20870706 gataatatatttttagataactttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataattaaaatggtacaa-tttatt 20870803  T
Q  229 gattcgcctaagacactaaaaatt 252  Q
    | |||| | | | |||||||||||    
T  20870804 gtttcgtccagggcactaaaaatt 20870827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 12263799 - 12263642
Alignment:
Q  31 ggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagata--tatttatttttaactccctttgattaattcttat 128  Q
    ||||||||||| | | ||| ||||||||||||||||||||||| | ||||||| || |||||||  | ||| ||||||| || ||||||||||||||  |    
T  12263799 ggcaccatttttttaggggcaccaaaattattatttttacttaatggttagtactatatagatatttttttttttttaattcgctttgattaattctatt 12263700  T
Q  129 gaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgca 186  Q
    |||||||| |||| | |||||||| |||||  |||||||||||| || |||| |||||    
T  12263699 gaaaatatatttttaaagaactttgattatagatgaatcttttgcaataaaagatgca 12263642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 16570625 - 16570492
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||| ||||| |||  | |||||||||||| ||||||| || ||||||||||||||  | ||||||| |||| ||||||||||    
T  16570625 caaaattattatttttacttattagttggtaccatatagatatatttctttttaattcactttgattaattctattaaaaatatatttttagagaacttt 16570526  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgca 186  Q
     ||||  ||| |||||||||  ||| ||||||||    
T  16570525 gattaaaaattaatcttttgccacagaaaatgca 16570492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 7887348 - 7887264
Alignment:
Q  21 ggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttattttt 105  Q
    |||| ||||||||||||||   | | ||| ||||||||||||||||||||||||||||||||| || |||||||| ||| |||||    
T  7887348 ggcagcccagggcaccattggtttaggggcaccaaaattattatttttacttagtagttagtactatatagatatgtttcttttt 7887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 36161044 - 36161170
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||  ||||||||| ||||| |||||||| |||   ||||| |   ||||||||||| |  |||||||||||||||| | ||||||    
T  36161044 caaaattattatttttatgtagtagttaatattatatagatattttt---tttaaattattttgattaattatattgaaaatatgttttaaaa-aacttt 36161139  T
Q  153 tattatcaatgaatcttttgtaacaaaaaat 183  Q
     || || |||||||||||||||| |||||||    
T  36161140 gatcatgaatgaatcttttgtaataaaaaat 36161170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 39542410 - 39542615
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||| |||||||||||| || ||  |||||| | |||||||  |   || ||| ||| |  |||||||||||||| | ||||||||    
T  39542410 caaaattattatttttacgtagtagttagtactatatgaatatatat-tttttaaagcgtgtttattgattatattgaaaatatgtttttaaagaacttt 39542508  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaatt 252  Q
     ||||| ||| || |||||  || |||||||||| ||||||| ||||||  ||||||||||  | |||| |||||| |||||| || | ||| ||||||     
T  39542509 gattatgaat-aaacttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacaattttattaattcgcatagggcaccaaaaata 39542607  T
Q  253 ttaagacc 260  Q
    ||||||||    
T  39542608 ttaagacc 39542615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 7886702 - 7886560
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||| ||| ||||||| || ||||||||||||||  ||||||||| | || ||| |||||| ||||| | ||||| ||||| ||||||||| | | ||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaatatatgtttagataactttgattataagtgaatattttggaacaaaaaa-gtaagaag 7886604  T
Q  192 aaaaacattcgaataattaaaatagtacaactttattgattcgcc 236  Q
    |||||  || ||||||||||||| | |||| ||||||| ||||||    
T  7886603 aaaaatgtttgaataattaaaatggcacaa-tttattgtttcgcc 7886560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 233
Target Start/End: Original strand, 8934060 - 8934240
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    ||||||||||||| || ||| |||||||| | | ||| |||||||| ||||||||||  ||||||||||| |  |||| |||| |||| |||||   ||     
T  8934060 aaaattattatttatatttaatagttagtgt-acatatatatattt-tttttaactcattttgattaattatattgaagatatatttttagagagtctta 8934157  T
Q  154 attatcaatgaatcttttgtaacaaa---aaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattc 233  Q
    ||||| |||||||| |||||||||||   ||||| | ||||||||| |||  ||||||||||||  || | ||||||||||||    
T  8934158 attatgaatgaatcatttgtaacaaaaagaaatgtaagaagaaaaatatttaaataattaaaatgatatatctttattgattc 8934240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 3597041 - 3596911
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||| |||||| |||||||||    ||||||||| ||||||| ||  |||||||||||||  | ||||||| |||| | | || |||    
T  3597041 caaaattattatttttatttagtaattagtattattgtgatatatttctttttaattcgttttgattaattctattaaaaatatatttttataaaaattt 3596942  T
Q  153 tattatcaatgaatcttttgtaacaaaaaat 183  Q
     | ||| | ||||||||||| || |||||||    
T  3596941 gaatataagtgaatcttttgaaaaaaaaaat 3596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 10325763 - 10325717
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    ||||||||||||||||||||||||| ||||||| || ||| ||||||    
T  10325763 accaaaattattatttttacttagttgttagtactatatatatatat 10325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 13580512 - 13580327
Alignment:
Q  28 cagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctta 127  Q
    |||| ||||||||| | | ||| ||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||| || ||||||||||||||      
T  13580512 caggacaccatttttttaggggcaccaaaattattatttttacttaatagttagtattatataaatatatttctttttaattcgctttgattaattctat 13580413  T
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||||| |||| | | ||||||  |||| ||||||| ||||| ||||||||||||| ||  ||||| ||| ||||||||||||    
T  13580412 tgaaaatatatttttaaataactttggttataaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaa 13580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 26835744 - 26835593
Alignment:
Q  32 gcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaa 131  Q
    |||||||||| | | ||| ||||||||||||||||||||||| |||||||||  | ||| |||||||| ||||||| |  |||| |||||||||  ||||    
T  26835744 gcaccatttttttaggggcaccaaaattattatttttacttaatagttagtacaatataaatatatttctttttaattttcttttattaattctattgaa 26835645  T
Q  132 aatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaat 183  Q
    ||||| |||| |||||||||| ||||| |||||||||| || ||||||||||    
T  26835644 aatatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaat 26835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 13236221 - 13236343
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| ||||||| || |||||||||||||| |||||||||| |||| |||||||||| ||||| || |||| ||||| |||||| |||||| ||||    
T  13236221 atatatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaag 13236320  T
Q  192 aaaaacattcgaataattaaaat 214  Q
    ||||| ||| |||||||||||||    
T  13236321 aaaaatattggaataattaaaat 13236343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 22930295 - 22930439
Alignment:
Q  27 ccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctt 126  Q
    ||||||||||||||| | | ||| ||||||||||| ||||||||||| ||||||||| || |||||||||| | ||||||| || ||||||||||||||     
T  22930295 ccagggcaccattttttcaggggcaccaaaattataatttttacttaatagttagtactatatagatatatatctttttaattcgctttgattaattcta 22930394  T
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatctttt 171  Q
     |||||| || |||| ||| |||||| ||||| ||||||| ||||    
T  22930395 ttgaaaaaatatttttagataactttgattataaatgaatatttt 22930439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 34141991 - 34142123
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt 119  Q
    ||||| |||||||||||| ||| | | ||| ||||||| ||||||||||| ||||||||||||| || |||||||||||| |||||||  | ||||||||    
T  34141991 cggcagcccagggcaccactttgttaggggcaccaaaactattatttttatttagtagttagtactatatagatatatttctttttaatccgctttgatt 34142090  T
Q  120 aattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||  ||||||||| |||| ||| ||||||    
T  34142091 aattctattgaaaatatattttcagataacttt 34142123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 9191200 - 9191351
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||| || ||||||||||||||  | ||||||| |||| |||||||| |    
T  9191200 caaaattattatttttacttagtagttat------atagatatatttatttttaattcactttgattaattctattcaaaatatatttttagagaactat 9191293  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||||||||  |||||| |||||   |||||||| |||  |||||||||||    
T  9191294 gattataaatgaatcttttacaacaaataatgc---aagaaaaatattgaaataattaaaa 9191351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 31383464 - 31383655
Alignment:
Q  43 taaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgtttta 142  Q
    ||||||| | |||||||||||||||| |||| |||||| ||||| |||  |||| |||||||||| | ||||| ||||||| |  |||||||||| |||     
T  31383464 taaagggcatcaaaattattattttttcttaatagttaatattatataagtataattatttttaatttcctttaattaattttattgaaaatatggtttt 31383563  T
Q  143 agagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    ||  |||||| | ||| ||||||||||||| ||| |||||| ||  |  ||| || ||||||||||| ||   |||||||||||||||||||    
T  31383564 agctaactttgaatatgaatgaatcttttgcaacgaaaaatacataacaaaatacgttcgaataatttaagaggtacaactttattgattcg 31383655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 22486756 - 22486608
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt 119  Q
    ||||| ||||||||| |||||| | | ||| ||||||||||||||| |||||||||||| | ||  |||||||||| ||| ||||||| |   |||||||    
T  22486756 cggcagcccagggcatcattttttta-gggtaccaaaattattattcttacttagtagtcactacaaaatagatatgtttctttttaatttgttttgatt 22486658  T
Q  120 aattcttatgaaaatatgttttaagagaacttttattatcaatgaatctt 169  Q
    ||||||  |||||||||  ||| |||||||||| ||||| ||||||||||    
T  22486657 aattctattgaaaatatcattttagagaactttgattataaatgaatctt 22486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 4350802 - 4350596
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagata---tatttatttttaactccctttgattaattcttatgaaaatatgttttaagaga 147  Q
    ||||||||||||||||||| |||||||||||||||| |||||||   ||||| ||||||| || ||||| ||||||||  ||||||||| |||| | | |    
T  4350802 accaaaattattatttttatttagtagttagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttttatata 4350703  T
Q  148 acttttat----tatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagaca 243  Q
    ||||| ||    ||| || |||| ||||  ||||||||||||| ||| ||||| |||  |||||||||||  |||||| ||||||| |||| | | ||||    
T  4350702 actttgattatatataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaa-tttattgtttcgtccaggaca 4350604  T
Q  244 ctaaaaat 251  Q
    | ||||||    
T  4350603 cgaaaaat 4350596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 31277936 - 31278064
Alignment:
Q  101 tttttaactccctttgattaattcttatgaaaatatgt-tttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacat 199  Q
    |||||||||| ||||||||||||||  ||||||||| | ||| ||||||| || ||||| ||||||||||||| | | |||||| || ||||||| | ||    
T  31277936 tttttaactcactttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagagat 31278035  T
Q  200 tcgaataattaaaatagtacaactttatt 228  Q
    ||||||||| ||||| | |||||||||||    
T  31278036 tcgaataataaaaatggcacaactttatt 31278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 28376655 - 28376725
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaa 121  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||  |||||||||    
T  28376655 accaaaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaa 28376725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 251
Target Start/End: Original strand, 24606847 - 24606969
Alignment:
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttat 227  Q
    ||||||||| |||||| ||||||||  |||| ||||||||||||| | ||||||||| | ||||||| |||||  ||||| |||||    |||||||| |    
T  24606847 tgaaaatattttttaa-agaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaaggacacaactttgt 24606945  T
Q  228 tgattcgcctaagacactaaaaat 251  Q
    ||||||||||||||||| ||||||    
T  24606946 tgattcgcctaagacaccaaaaat 24606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 43872544 - 43872667
Alignment:
Q  90 agatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacga 189  Q
    |||||||||| || |||| |  |||| |||||||||  || |||||| |||| | |||||||| ||||| |||||||||| || |||||||||| ||  |    
T  43872544 agatatatttcttcttaatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaa 43872643  T
Q  190 agaaaaacattcgaataattaaaa 213  Q
    ||||||| ||| ||||||||||||    
T  43872644 agaaaaatattagaataattaaaa 43872667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 41849429 - 41849562
Alignment:
Q  101 tttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacatt 200  Q
    |||||||||  | ||||||||||||  ||||||||| |||| | ||||  || ||||| ||||||||||||  |||||||||  ||  |||||| |||||    
T  41849429 tttttaacttgcattgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaaa-caaaaagaaagacatt 41849527  T
Q  201 cgaataattaaaatagtacaactttattgattcgc 235  Q
    | |||||||||||||  ||||||||| ||||||||    
T  41849528 caaataattaaaataacacaactttactgattcgc 41849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 12181824 - 12181872
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatt 102  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  12181824 aaaattattatttttacttagtaattagtattatatagaaatatttatt 12181872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 12426252 - 12426300
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatt 102  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  12426252 aaaattattatttttacttagtaattagtattatatagaaatatttatt 12426300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 13236133 - 13236194
Alignment:
Q  23 caacccagggcaccattttataaagggaaccaaaattatta-tttttacttagtagttagta 83  Q
    ||||| ||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||||||    
T  13236133 caacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagttagta 13236194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 39295586 - 39295475
Alignment:
Q  101 tttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacatt 200  Q
    |||||||||| |||||||| |||||  ||||||||  |||| ||| ||| || ||||  |||| || ||||| |||||||| | || ||||||| |||||    
T  39295586 tttttaactcactttgattgattctattgaaaatacatttttagaaaacctt-attacaaatggattttttgcaacaaaaattacatgaagaaacacatt 39295488  T
Q  201 cgaataattaaaa 213  Q
    |||||||||||||    
T  39295487 cgaataattaaaa 39295475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 21348481 - 21348439
Alignment:
Q  55 aaattattatttttacttagtagttagtattaaatagatatat 97  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||    
T  21348481 aaattcttatttttacttagtagttagtattatatatatatat 21348439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 26801891 - 26802011
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    ||||||||  ||||||||| |||||||||||| |  ||||| ||| || | ||||||| || ||||| || || || |||| ||||||||||  |  |||    
T  26801891 atatattttgttttaactcactttgattaattatattgaaa-tatattattagagaacattgattataaacgagtcctttgcaacaaaaaatttaataag 26801989  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    |||||||||| |||||||||||    
T  26801990 aaaaacattcaaataattaaaa 26802011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 23870020 - 23870206
Alignment:
Q  26 cccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||||||| || |||||||||| | ||||||| ||  |||||||||||||    
T  23870020 cccagggcaccacttttttaggggcaccaaaattattatttttacttagtagttagtactatatagatatatatttttttaattcgttttgattaattct 23870119  T
Q  126 tatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
      ||||||||| |||| ||| |||||| ||||| ||||||| ||||| ||||||||| ||| ||| ||||| |||  |||||||||||    
T  23870120 attgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaaagcaagaa-aaaaaaattgtaataattaaaa 23870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 2113812 - 2113999
Alignment:
Q  26 cccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    ||||||||||||||||   | ||| |||||||||||||| ||||  |||||||||||| || |||||||||||| ||| ||| |  |||||||||||| |    
T  2113812 cccagggcaccattttcataggggcaccaaaattattatctttatgtagtagttagtactacatagatatatttctttctaaattgctttgattaattat 2113911  T
Q  126 tatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
      |||||||||||||| | ||||| || ||||| ||| ||||||||| || ||||||| || ||||||| |||||| |||||||||||    
T  2113912 attgaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaa 2113999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 36071685 - 36071557
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    |||||||||||||||||||  ||||||||| || |||||||||||| ||||||| |  |||||||||||||   ||||||||| |||| ||||||||||     
T  36071685 aaaattattatttttacttgatagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaaatatatttttagagaactttg 36071586  T
Q  154 attatcaatgaatcttttgtaacaaaaaa 182  Q
    ||||| |||||||||| || |||||||||    
T  36071585 attataaatgaatcttatgcaacaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 12320404 - 12320580
Alignment:
Q  54 aaaattatta-tttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||| ||||||||||||||||||||| | |||||||||| | ||||||| ||  ||||||||||| |  ||| ||||| |||| | | |||||     
T  12320404 aaaattattactttttacttagtagttagtataatatagatatatatctttttaattcggtttgattaattatattgagaatatttttttaaaaaacttc 12320503  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattg 229  Q
     ||||| ||||||| ||||| ||||||||||| | ||||||||  ||| |||||||||||| || |||| |||||||    
T  12320504 gattataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattg 12320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 7102144 - 7102289
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    |||||||||||||||| |  | ||||||||||| |||||||||||| ||||||| |   |||||||||| ||  ||||||||  |||| |||||||||||    
T  7102144 aaaattattatttttagtcggcagttagtattatatagatatattt-tttttaatttgttttgattaatcctattgaaaatacatttttagagaactttt 7102242  T
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacatt 200  Q
    ||||| |||||||||| || |||||||| | || |||||||||||||    
T  7102243 attataaatgaatcttgtgcaacaaaaagtacaagaagaaaaacatt 7102289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 3643273 - 3643092
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||| ||||||| |  | |||||||||| |  ||||||  | |||| | ||| ||||    
T  3643273 caaaattattatttt-acttagtagttagtactatatagatatatttctttttaatttgcattgattaattatattgaaaagttatttttaaagagcttt 3643175  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgc 235  Q
     || || ||||||| || || |||||||||| || ||||||||| ||| |||||||||||||   |||| ||||||| |||||    
T  3643174 gataataaatgaattttgtgcaacaaaaaatccaagaagaaaaatattggaataattaaaatgacacaattttattgtttcgc 3643092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 29118469 - 29118603
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttattttt-aactccctttgattaattcttatgaaaatatgttttaagagaac 149  Q
    |||||||||||||||||||  |||||||||||| || |||||||||||| ||||| || | | ||| ||||||| |  |||||||||||||| | |||||    
T  29118469 accaaaattattatttttatgtagtagttagtactacatagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttttaaagaac 29118568  T
Q  150 ttttattatcaatgaatcttttgtaacaaaaaatg 184  Q
    ||| ||||| ||||||| ||||| || ||||||||    
T  29118569 tttgattatgaatgaatattttgcaataaaaaatg 29118603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 7853293 - 7853475
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||| |||||||||||||||||||||||||| || |||||||||| |  |||||| ||  ||||||||||  |  ||||||||| |||| ||| ||||    
T  7853293 accaaatttattatttttacttagtagttagtactatatagatatatatccttttaattcagtttgattaatgatattgaaaatatatttttagaaaact 7853392  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    || ||||| |||||||  |||| ||  ||||||| | ||||||||  |||  |||||||||||  |||||| ||||||| ||||    
T  7853393 ttgattataaatgaattctttgcaa-taaaaatgtaagaagaaaactattgaaataattaaaagggtacaattttattgtttcg 7853475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 35372230 - 35372063
Alignment:
Q  55 aaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttta 154  Q
    ||||||||||||||||||||||||||| | ||      ||||||| ||||||| ||  ||||||||||| |  ||||||||| |||| ||||| |||| |    
T  35372230 aaattattatttttacttagtagttaggacta------tatattt-tttttaattcagtttgattaattatattgaaaatatatttttagagagctttaa 35372138  T
Q  155 ttatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattg 229  Q
    |||| || ||||||  || ||||||||||| | ||||||||| ||| ||||| ||||||| | ||||||||||||    
T  35372137 ttataaacgaatctcatgcaacaaaaaatgtaagaagaaaaatattagaatatttaaaatggcacaactttattg 35372063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 4596588 - 4596455
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||| ||||| ||||||| || ||| |||||||| ||||||| || |||||||| ||| |  ||||||||| |  ||  | ||| ||    
T  4596588 caaaattattatttttatttagttgttagtaatatatatatatatttgtttttaattcactttgattgattttattgaaaatatatactagaaaaacctt 4596489  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgca 186  Q
     ||||| ||||||||||||| |||||||||||||    
T  4596488 gattatgaatgaatcttttgcaacaaaaaatgca 4596455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 5627494 - 5627651
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||||||||||||||||| | ||||||||||    ||| |||||||  ||||||| ||  ||||||||||| |  |||||| ||||||| | | ||||    
T  5627494 accaaaattattatttttacatggtagttagta----atatatatattc-tttttaattcgttttgattaattatattgaaaaaatgtttttatataact 5627588  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     | ||||| ||||||| ||||| |||||||||||||  |||||||| ||| ||||||||||||    
T  5627589 ctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaa 5627651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 43515980 - 43515787
Alignment:
Q  59 tattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattat 158  Q
    |||| |||||||||| |||||||||||| |||||||||| | ||||||| |   ||||||||||| |  | | ||||| || | ||| |||||| |||||    
T  43515980 tattttttttacttattagttagtattatatagatatatatctttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattat 43515881  T
Q  159 caatgaatcttttgtaac-aaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaat 251  Q
     ||||||||||||| ||| |||||||| | ||||||||  ||| |||||| |||||  | |||| ||||||| |||||| | ||||| ||||||    
T  43515880 aaatgaatcttttgcaacaaaaaaatgtaagaagaaaactattagaataactaaaagggcacaattttattgtttcgcccaggacaccaaaaat 43515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 48653742 - 48653828
Alignment:
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    |||||||||| || | ||||||  || ||||| ||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||    
T  48653742 atgaaaatattttcttagagaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaa 48653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 53178749 - 53178926
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||| | |||| |||||||||||||||| ||| ||||||||  ||||||||  |||||||||||| |  ||||  ||| |||| |  |||||||    
T  53178749 caaaattattttatttatttagtagttagtattatataaatatattt--ttttaacttactttgattaattttattgaatgtatatttttaacgaacttt 53178846  T
Q  153 tattatcaatgaatcttttgtaacaaaaaa-tgcacgaagaaaaacattcgaataattaaaatagtacaactttattgatt 232  Q
     ||||| ||||||| ||||| ||||||||| | |   |||||| |||||  |||||||||||||  |||||||||||||||    
T  53178847 gattatgaatgaat-ttttgcaacaaaaaaataccataagaaagacatttaaataattaaaataacacaactttattgatt 53178926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 25779773 - 25779590
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||||||||||||| |||||||||  |   | |||||||| |||||| ||   ||||||||||| |  | ||||||| |||  ||| ||||    
T  25779773 accaaaattattatttttacttattagttagtacgatgcacatatatttctttttacctttttttgattaattttgttaaaaatatatttgtagaaaact 25779674  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    || ||||| |||||||||| || |||||| ||||||  ||| || | |||| |||||||| |||    ||||||||||||||||    
T  25779673 ttgattatgaatgaatcttctgcaacaaagaatgcaaaaaggaagatattcaaataattagaatgacgcaactttattgattcg 25779590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 8733093 - 8732999
Alignment:
Q  164 aatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattttaaga 258  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||||| |||||   |||||||||||  |||||||| ||||| ||||  |||||||    
T  8733093 aatcttttgcaacaaaaaatgctagaagaaaaacatttgaataataaaaatgccacaactttatttgttcgcctaggacaccaaaagatttaaga 8732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 15986999 - 15986881
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||| |||| |||| ||||||||||||| || ||||||||||||||||||||     |||||||||||||  |||||||||  ||| | ||||| ||    
T  15986999 caaaattgttatctttaattagtagttagtactatatagatatatttatttttaatgtgttttgattaattctattgaaaatataattttaaagaacctt 15986900  T
Q  153 tattatcaatgaatctttt 171  Q
     || || ||||||||||||    
T  15986899 aatcatgaatgaatctttt 15986881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 47059675 - 47059745
Alignment:
Q  38 ttttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaac 108  Q
    |||| ||| ||| ||||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||    
T  47059675 ttttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 47059745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 47082127 - 47082057
Alignment:
Q  38 ttttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaac 108  Q
    |||| ||| ||| ||||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||    
T  47082127 ttttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 47082057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 12167050 - 12167121
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattc 124  Q
    |||||||||||||||| ||||||| |||||| || ||| || ||||||||||||||||  ||| ||||||||    
T  12167050 caaaattattatttttgcttagtaattagtagtatatatatgtatttatttttaactcaattttattaattc 12167121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 20811597 - 20811475
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| |||||||||  |||| |||| || |  ||||||||| |||| | |||| ||| ||||| | ||||  ||||| ||| ||||||| | ||||    
T  20811597 atatatttgtttttaacttgctttaattatttatattgaaaatatatttttaaagaattttgattatgagtgaagtttttgcaacgaaaaatgaaagaag 20811498  T
Q  192 aaaaacattcgaataattaaaat 214  Q
     ||||||||||||||||||||||    
T  20811497 caaaacattcgaataattaaaat 20811475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 37226342 - 37226444
Alignment:
Q  161 atgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattttaagacc 260  Q
    |||||||||||| ||||||||||| |  || ||| |||||| ||||||||||| |  || | |||||||||||| | ||||||| ||| || ||||||||    
T  37226342 atgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaacacgattttattgattcgtccaagacaccaaagatcttaagacc 37226441  T
Q  261 aac 263  Q
    |||    
T  37226442 aac 37226444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 40807977 - 40807927
Alignment:
Q  75 tagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||||||    
T  40807977 tagttagtattatatagatatatttctttttaattcgctttgattaattct 40807927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 38087652 - 38087703
Alignment:
Q  46 agggaaccaaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    |||| ||||||||||||||||||||||| |||||||||  | ||||||||||    
T  38087652 agggcaccaaaattattatttttacttaatagttagtacaatatagatatat 38087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 8733213 - 8733167
Alignment:
Q  33 caccattttataaagggaaccaaaattattatttttacttagtagtt 79  Q
    ||||||||| | ||||| ||||||||||||| |||||||||||||||    
T  8733213 caccatttttttaagggcaccaaaattattaattttacttagtagtt 8733167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 55147957 - 55147883
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    ||||||||||||||||||||||| |||| | ||  | |||||||||||| ||||||| |   |||||||||||||    
T  55147957 accaaaattattatttttacttaatagtcactacaacatagatatatttctttttaatttgttttgattaattct 55147883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 48653269 - 48653310
Alignment:
Q  31 ggcaccattttataaagggaaccaaaattattatttttactt 72  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  48653269 ggcaccattttttaagtggaaccaaaattattatttttactt 48653310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 40807914 - 40807842
Alignment:
Q  114 ttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgca 186  Q
    ||||||||||||  | |||||||||||| ||| ||| || ||||| |||||||||| |  |||||||||||||    
T  40807914 ttgattaattctattaaaaatatgtttttagataacattgattatgaatgaatcttatccaacaaaaaatgca 40807842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 51002700 - 51002624
Alignment:
Q  160 aatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcc 236  Q
    |||||||||||||  | |||||||| | ||||||| ||||| ||||||||||||  | |||| |||||| |||||||    
T  51002700 aatgaatcttttgcgataaaaaatgtaagaagaaagacatttgaataattaaaaaggaacaagtttatttattcgcc 51002624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 55147739 - 55147639
Alignment:
Q  113 tttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaa 212  Q
    ||||||||||| |  ||||||| | |||| |||||||||| ||||| |||||||||| |  ||||||||||  |  | |||||| ||| |||||||||||    
T  55147739 tttgattaattttattgaaaatgtctttttagagaactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaa 55147640  T
Q  213 a 213  Q
    |    
T  55147639 a 55147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 35812589 - 35812774
Alignment:
Q  28 cagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctta 127  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||| || |||||| || |||||||||||| ||||||| || ||||||| ||||||      
T  35812589 cagggcaccatttttttaggggcatcaaaattattatttttacttaataattagtactatatagatatatttctttttaattcgctttgatcaattctat 35812688  T
Q  128 tga-aaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaa 212  Q
    ||| |||||| |||| ||| |||||| ||||| ||||||| ||||| ||||||||||||| |||||| || ||| |||||||||||    
T  35812689 tgataaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 26914472 - 26914312
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||| |||||| ||  ||||||||||| |  ||||||||| |||| | | ||| ||    
T  26914472 caaaattattatttttacttagtagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaaaatatatttttaaataacgtt 26914373  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||| ||||| ||||||||||||| ||||||||| |||  |||||||||||    
T  26914372 aattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaa 26914312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 55 - 213
Target Start/End: Complemental strand, 3940778 - 3940621
Alignment:
Q  55 aaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttta 154  Q
    |||||||||||||||||||||||| ||||| | |||||||||||| ||||||| |  ||||||||||||||  | ||||||| |||| | |||||||| |    
T  3940778 aaattattatttttacttagtagtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactttga 3940679  T
Q  155 ttatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    |||| ||| |||||| || ||| |||||| ||  |||||||| ||| ||||||||||||    
T  3940678 ttataaataaatcttgtgcaac-aaaaatacaaaaagaaaaatattagaataattaaaa 3940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 13431822 - 13431633
Alignment:
Q  24 aacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaatt 123  Q
    |||| ||||||||||||| | | | | || |||||||||||| ||| ||||||| |||||||| |||||||||||||||||| | |   ||||| |||||    
T  13431822 aacctagggcaccatttttttaggagcactaaaattattattcttatttagtaggtagtattatatagatatatttatttttgattttttttgaataatt 13431723  T
Q  124 cttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaat 214  Q
    ||  ||||||||| |||   |||||| || ||||| ||||||||||| | |||||||||| || ||| |||||| ||||||||||||||||    
T  13431722 ctattgaaaatatatttgtggagaaccttgattatgaatgaatctttagcaacaaaaaatacaagaa-aaaaactttcgaataattaaaat 13431633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 40351905 - 40351700
Alignment:
Q  45 aagggaaccaaaattattatttttacttagtagttagtattaaatagatatattta-tttttaactccctttgattaattcttatgaaaatatgttttaa 143  Q
    ||||| |||||| |||||||||||||| |||||||||||||| ||||||||| ||| ||||||| |  | ||| ||||||||  ||||||||| |||| |    
T  40351905 aagggcaccaaagttattatttttactcagtagttagtattatatagatataattattttttaattatccttgtttaattctattgaaaatatattttta 40351806  T
Q  144 gagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagaca 243  Q
     |||||||| ||||| ||| |||||||   ||||||||||||| ||  ||||| ||| ||||||||||||  | | || ||||||| |||| | ||||||    
T  40351805 aagaactttgattataaataaatctttatcaacaaaaaatgcaaga--aaaaaaattagaataattaaaagggaagaattttattgtttcgtccaagaca 40351708  T
Q  244 ctaaaaat 251  Q
    | ||||||    
T  40351707 ccaaaaat 40351700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 260
Target Start/End: Original strand, 21828162 - 21828367
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    |||||||||||||||||||  |||| | ||  |||||||||||||| |||||||||   |||||||||| ||  ||||||||  ||||| |||||||||     
T  21828162 aaaattattatttttacttcatagtcactacaaaatagatatatttctttttaacttgttttgattaatgctattgaaaatacttttta-gagaactttg 21828260  T
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattt 253  Q
    ||||| |||||||||| || ||||||||||  | || |||||| ||| ||||||||||||  |||||| ||| ||  ||||||| || ||| |||||| |    
T  21828261 attataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaaagggtacaatttttttctttcgcctcaggcaccaaaaatct 21828360  T
Q  254 taagacc 260  Q
    || ||||    
T  21828361 taggacc 21828367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 12177813 - 12177965
Alignment:
Q  60 attatttttacttagtagttagtattaaatagatatattta--tttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttatta 157  Q
    |||||||||||||||||||||||| || |||||||||| ||  ||||||| ||  ||| ||||||| |  ||||||||| |||| ||| ||| |||||||    
T  12177813 attatttttacttagtagttagtactatatagatatatatatctttttaattcggtttaattaattttattgaaaatatatttttagaaaac-tttatta 12177911  T
Q  158 tcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    |  |||||||||||| ||||||||||| | ||||||||  ||| ||||||||||    
T  12177912 tagatgaatcttttgcaacaaaaaatgtaagaagaaaactattagaataattaa 12177965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 33480621 - 33480460
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||||||||||||||||  || ||||||||| || |||||||||||| ||| ||| |  |||||||||||| |  | |||||||||||| | |||||     
T  33480621 accaaaattattatttttatgtaatagttagtactacatagatatatttctttctaaattgctttgattaattatattaaaaatatgtttttaaagaac- 33480523  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||||| ||| |||||| || || ||||||| || ||||||| |||||| |||||||||||    
T  33480522 cttattatgaattaatcttctgcaataaaaaatacaagaagaaagacattcaaataattaaaa 33480460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 3351119 - 3351240
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| ||||||| || ||||||||||||||  ||||| ||| |||| ||| |||||| ||||| ||||||| ||||  ||||||||||||| ||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaag 3351218  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    ||||| |||  |||||||||||    
T  3351219 aaaaatattttaataattaaaa 3351240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 51 - 215
Target Start/End: Complemental strand, 9429467 - 9429304
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||||||| |||||||| ||| |||||||||||| ||| |||||||| |||||| |||  |||||||||||||  |||||||||  ||||| ||||||    
T  9429467 accaaaattagtatttttatttaatagttagtattatataaatatatttctttttatctcgttttgattaattctattgaaaatattatttaa-agaact 9429369  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaata 215  Q
    |  ||||| ||| ||| ||||| ||||  ||||||  |||| |||| |||  |||||||||||||    
T  9429368 tcgattataaataaattttttgcaacagcaaatgctagaagtaaaatattaaaataattaaaata 9429304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 42336062 - 42335943
Alignment:
Q  65 ttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatga 164  Q
    ||||| ||| |||||||||||| |||||||||||| ||||||| ||  ||| ||||||| |  ||||||||| |||| | | |||||| ||||| |||||    
T  42336062 ttttagttaatagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatga 42335963  T
Q  165 atcttttgtaacaaaaaatg 184  Q
    |||||||| |||||||||||    
T  42335962 atcttttgcaacaaaaaatg 42335943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 22318791 - 22318662
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    |||||||||||||||| |||||||||| ||||| |||||||| | | |||| || ||| ||||||||||| |  ||| ||||| |||| ||| ||||||     
T  22318791 aaaattattatttttatttagtagttaatattatatagatatgtatctttt-aattccgtttgattaattatattgagaatatatttttagaaaacttta 22318693  T
Q  154 attatcaatgaatcttttgtaacaaaaaatg 184  Q
    ||||| ||| ||||||||| |||||||||||    
T  22318692 attataaataaatcttttgcaacaaaaaatg 22318662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 26448411 - 26448533
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| ||||||| || ||||||||||||||  | ||| ||| |||| |||||||||| || || ||||||||||||| ||||||||||||| |||     
T  26448411 atatatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaagaaa 26448510  T
Q  192 aaaaacattcg-aataattaaaa 213  Q
    ||||| ||| | |||||||||||    
T  26448511 aaaaatatttgaaataattaaaa 26448533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 21129478 - 21129326
Alignment:
Q  31 ggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatga 130  Q
    ||||||||||| | | ||| || ||| |||||||| ||| |||||||| | ||  |||||||||||||| ||||||| |   |||||||||||||  |||    
T  21129478 ggcaccatttttttaggggtactaaatttattattcttatttagtagtcactacaaaatagatatatttctttttaatttggtttgattaattctattga 21129379  T
Q  131 aaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaat 183  Q
    |||||| |||| |||||| ||| ||||| ||| ||||||||| || |||||||    
T  21129378 aaatatttttttagagaattttgattataaattaatcttttgcaataaaaaat 21129326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 26912345 - 26912486
Alignment:
Q  71 ttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttt 170  Q
    ||||||||||||| || |||||||||||| ||||||| || ||||||||||||||  | || |||| |||| ||| |||||| ||||  |||||||  ||    
T  26912345 ttagtagttagtactatatagatatatttctttttaattcgctttgattaattctattcaagatatatttttagataactttgattacaaatgaat-att 26912443  T
Q  171 tgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||| ||| |||||||| ||| || || ||| ||||||||||||    
T  26912444 tgtcacataaaatgcaagaaaaataatattagaataattaaaa 26912486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 30095922 - 30095845
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    ||||| |||||||||||||||| | | ||| |||||||||||||||||||||||||||||| || || ||| ||||||    
T  30095922 cggcagcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagttattaatatatatatatat 30095845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 21292861 - 21292802
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactc 110  Q
    |||||||||||||||||||||||||||||| ||| | ||| |||||||| ||||||||||    
T  21292861 accaaaattattatttttacttagtagttaatatcatataaatatatttctttttaactc 21292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 36066113 - 36066271
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||||| ||| |||   ||| ||| ||||| ||||||| | |||  ||||||| |  ||||||||| |||| |||||| |||    
T  36066113 caaaattattatttttacttagtaattaatatcgcatacata-atttaattttaacccgcttaaattaattgtattgaaaatatatttttagagaatttt 36066211  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||| ||||||||  ||| |||||| || ||||||| ||||| |||||| |||||    
T  36066212 gattatgaataaatcttttacaac-aaaaatacaagaagaaagacatttgaataactaaaa 36066271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 15133397 - 15133276
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||| ||||| ||| ||  |||||||||||||  | |||| || |||| ||| |||||| ||||| ||||||| ||||  ||||||||||| | |||     
T  15133397 atatatatatttctaattcgttttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaacaaaaaatgtaagaaa 15133298  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    ||||| ||| ||||||||||||    
T  15133297 aaaaatatttgaataattaaaa 15133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 31329716 - 31329665
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttt 104  Q
    |||||||||||||||||||| ||| ||||||||| ||| |||||||| ||||    
T  31329716 caaaattattatttttacttcgtaattagtattatatacatatatttctttt 31329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 32982336 - 32982407
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattct 125  Q
    ||||||||||||||||||| |||||||| |    ||| |||||||| ||||||||||  |||||||||||||    
T  32982336 aaaattattatttttacttggtagttaggagagtatacatatatttttttttaactcattttgattaattct 32982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 32982464 - 32982507
Alignment:
Q  189 aagaaaaacattcgaataattaaaatagtacaactttattgatt 232  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||    
T  32982464 aagacaaaaattcgaataattaaaataatacaactttattgatt 32982507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 15134582 - 15134537
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatata 96  Q
    ||||||||||||||||||||||||||| ||||| || ||| |||||    
T  15134582 accaaaattattatttttacttagtagctagtactatatatatata 15134537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 37996507 - 37996536
Alignment:
Q  51 accaaaattattatttttacttagtagtta 80  Q
    ||||||||||||||||||||||||||||||    
T  37996507 accaaaattattatttttacttagtagtta 37996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 36572901 - 36572980
Alignment:
Q  95 tatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaa 175  Q
    |||||||||||||||| |||| |||||||| |||  ||||||||||| ||| ||  || | ||| ||||||||||||||||    
T  36572901 tatttatttttaactctctttcattaattc-tattgaaatatgtttttagataatcttaaatatgaatgaatcttttgtaa 36572980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 37996570 - 37996602
Alignment:
Q  154 attatcaatgaatcttttgtaacaaaaaatgca 186  Q
    ||||| |||||||||||||||||||||||||||    
T  37996570 attataaatgaatcttttgtaacaaaaaatgca 37996602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 33510252 - 33510096
Alignment:
Q  28 cagggcaccattttataaaggga-accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattctt 126  Q
    |||||||||||||| | || ||| | ||||||||||||||||||||||||||||||  || |||||||||||| ||||||| ||  ||||||||||||      
T  33510252 cagggcaccatttttttaatggacatcaaaattattatttttacttagtagttagtgctacatagatatatttctttttaattcgttttgattaattcca 33510153  T
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaat 183  Q
     ||||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||    
T  33510152 ttgaaaatatatttttagagaactttaattataaatgaatcttttgcaacaaaaaat 33510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 33682780 - 33682610
Alignment:
Q  64 tttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatg 163  Q
    |||||||||| ||||||||| || |||||||||||| ||||||| || ||||||||||||||  | ||||||| |||| | ||||| || | ||| || |    
T  33682780 tttttacttaatagttagtactagatagatatatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaagg 33682681  T
Q  164 aatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    ||||||||||||||| ||||||  ||||||| ||||||||| ||||||||  | |||||||||||||||||    
T  33682680 aatcttttgtaacaacaaatgctagaagaaagacattcgaaaaattaaaagggcacaactttattgattcg 33682610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 168814 - 168635
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||| |||||||||||| |||||||||| || | || ||| ||||||| ||||||||||| || |||||||||||  ||||||||| ||||| ||||||     
T  168814 accataattattatttt-acttagtagtcagcactatataaatatatt-atttttaactcgctgtgattaattctattgaaaatatatttta-gagaacc 168718  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    || ||||| |||||||||||||||||||||||||||  |||||| | ||| |||||||||||  | | ||||||||||||||||    
T  168717 ttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaagaaattagaataattaaagga-tgcaactttattgattcg 168635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 15670919 - 15671078
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||| ||||||| |   |||||||||||||  ||||||||| |||| ||| ||||||     
T  15670919 aaaattattatttttacttagtagttattacaatatagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttg 15671018  T
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatag 216  Q
    ||||| |||||||||| || ||||||| || |   |||||||| ||| |||||||||||||||    
T  15671019 attataaatgaatcttgtgcaacaaaatatac---aagaaaaatattagaataattaaaatag 15671078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 8266749 - 8266563
Alignment:
Q  28 cagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgatt-aattctt 126  Q
    |||| ||||||||| |||| || ||||||||||| |||||||| || |||||||||||| |||| |||||||  |||||||||  ||||||| || |||     
T  8266749 caggacaccattttttaaaaggcaccaaaattatgatttttacgtaatagttagtattatataggtatattttcttttaactctgtttgattaaactcta 8266650  T
Q  127 atgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     |||||||||||||| ||||||| || ||||| |||||| |||||  |||||||||| ||  |||| | |||||  |||||||||||    
T  8266649 ctgaaaatatgttttcagagaaccttgattattaatgaaccttttacaacaaaaaatacaaaaagagagacatttaaataattaaaa 8266563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 54417151 - 54417030
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||| |||||||||  || ||||||| ||||  |||||| || ||||||||||||||  |||||||||||||| | |||| |||    
T  54417151 caaaattattatttttacttggtagttagtgctatatagatacatttccttttaattcactttgattaattctactgaaaatatgtttttaaagaatttt 54417052  T
Q  153 tattatcaatgaatcttttgta 174  Q
     ||||| |||||||||||||||    
T  54417051 gattataaatgaatcttttgta 54417030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 11383584 - 11383726
Alignment:
Q  46 agggaaccaaaattattatttttacttagtagttagtattaaatagatatatttattt--ttaactccctttgattaattcttatgaaaatatgttttaa 143  Q
    |||| ||||||||||||||||||| ||||||||||||| || ||| |||||| ||| |  |||| || |||||||||||||   |||||| || |||| |    
T  11383584 agggcaccaaaattattatttttatttagtagttagtaatatatatatatatatatatctttaattcgctttgattaattcaattgaaaaaatattttta 11383683  T
Q  144 gagaacttttattatcaatgaatcttttgtaacaaaaaatgca 186  Q
    || |||||| ||||| ||||||| ||||| |||||||||||||    
T  11383684 gataactttgattataaatgaatattttgcaacaaaaaatgca 11383726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 260
Target Start/End: Complemental strand, 27538881 - 27538709
Alignment:
Q  86 aaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgc 185  Q
    |||||||||||||||||||||| || ||||||||||||||  ||||||||| |||| | | |||||| ||||  ||||||| ||||| |||||||||| |    
T  27538881 aaatagatatatttatttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaacaaaaaatac 27538782  T
Q  186 acgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaattttaagacc 260  Q
    | ||| ||||| |||  |||| ||||||| |||||| ||||||| |||  | ||||||| |||||| ||| ||||    
T  27538781 aagaa-aaaaatattgaaatagttaaaatggtacaa-tttattgtttcatccaagacaccaaaaatcttaggacc 27538709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 2758073 - 2758258
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||||||||| ||||||||||||| || ||| | |||||| |||||||||   |||||||| |||| ||||| |||| |||| | | |||     
T  2758073 accaaaattattatttttaattagtagttagtactatataaacatatttctttttaactagttttgattatttctaatgaatatatatttttacataacc 2758172  T
Q  151 tttattatcaatgaatcttttgtaa---caaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcg 234  Q
    ||  |||| ||||||||||||  ||    ||||||   || ||||||||||||| ||||||||||| |  |||||||||||||||||    
T  2758173 ttggttatgaatgaatctttttaaaaagaaaaaaaaatac-aagaaaaacattcaaataattaaaagatcacaactttattgattcg 2758258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 11365106 - 11365207
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    |||||||||||||   |||||| || |||| | | |||||| ||||| ||||||| ||||| ||||||||||||| ||||||||| ||| ||||||||||    
T  11365106 ctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaa 11365205  T
Q  212 aa 213  Q
    ||    
T  11365206 aa 11365207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 39838467 - 39838645
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||  ||||| ||| ||||||||| |  ||| |||||||| ||||||||||  | ||||||||| |  ||||||||| ||| |||| | ||    
T  39838467 accaaaattatt--ttttaattactagttagtactgtataaatatatttctttttaactcattatgattaattatattgaaaatatttttaaaga-acct 39838563  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattc 233  Q
    || ||||| ||||||||||||| ||||||| || ||  || ||  | |||||| ||||||||| || ||||||||||| ||||    
T  39838564 ttgattatgaatgaatcttttgcaacaaaagatacaataataatgatattcgactaattaaaa-agcacaactttattaattc 39838645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 17713276 - 17713431
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||||| ||||| ||| ||||| ||||   ||||||| |  |||||||||||| |  ||| || || |||| |||||| |||    
T  17713276 caaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatattgacaa-atatttttagagaatttt 17713371  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||| ||||| || ||||| | || ||| ||||||||| ||||| ||||||    
T  17713372 gattatgaatgaatattttgcaagaaaaagtacaagaa-aaaaacattggaatagttaaaa 17713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 19014505 - 19014660
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    |||||||||||||||||||||||| ||||| ||| ||||| ||||   ||||||| |  |||||||||||| |  ||| || || |||| |||||| |||    
T  19014505 caaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatattgacaa-atatttttagagaatttt 19014600  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
     ||||| ||||||| ||||| || ||||| | || ||| ||||||||| ||||| ||||||    
T  19014601 gattatgaatgaatattttgcaagaaaaagtacaagaa-aaaaacattggaatagttaaaa 19014660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 27541197 - 27541147
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttattt 103  Q
    ||||||||||||||||| |||||| |||||| || ||||||||||||||||    
T  27541197 caaaattattatttttatttagtaattagtaatatatagatatatttattt 27541147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 7741724 - 7741792
Alignment:
Q  79 tagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagaga 147  Q
    |||||||| | |||||||||| ||||||||||  ||||||||||| |  |||||||||||||| |||||    
T  7741724 tagtattatagagatatatttctttttaactcattttgattaattttgttgaaaatatgtttttagaga 7741792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 47000948 - 47000835
Alignment:
Q  99 tatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaaca 198  Q
    ||||||||| || ||||||||||||||  |||||| || |||| ||| || ||| ||||| ||||||| ||||| ||||||||||  | ||||||||| |    
T  47000948 tatttttaattcgctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaata 47000850  T
Q  199 ttcgaataattaaaa 213  Q
    ||  ||| |||||||    
T  47000849 tttaaatgattaaaa 47000835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 33290758 - 33290858
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaa 211  Q
    |||||||||||| ||||  || ||| |||| |||||||||| || || |||||||||| || ||||||||| ||| | ||||||| |||  |||||||||    
T  33290758 ctttgattaatt-ttattgaattatatttttagagaactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaaataattaa 33290856  T
Q  212 aa 213  Q
    ||    
T  33290857 aa 33290858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 18258015 - 18257971
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    |||| |||||||||||||||| |||||||||||| ||| ||||||    
T  18258015 caaatttattatttttacttaatagttagtattatatacatatat 18257971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 42417929 - 42417977
Alignment:
Q  56 aattattatttttacttagtagttagtattaaatagatatatttatttt 104  Q
    ||||||||||||||||||||||||| || || ||| |||||||| ||||    
T  42417929 aattattatttttacttagtagttaatactatataaatatatttgtttt 42417977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 5844 - 6005
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||||||||| | ||||||||||| || |||||||||||| ||| ||| |  |||||||||||| |  |||||||||||||| | |||| |    
T  5844 accaaaattattattttta-tgagtagttagtactacatagatatatttctttctaaattgctttgattaattatattgaaaatatgtttttaaagaatt 5942  T
Q  151 tttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    || ||||| ||||||| ||||| || ||||||| || ||||||| |||||| |||||||||||    
T  5943 ttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 6005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 5163792 - 5163934
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||||||||||||| || ||| |||||| | ||||||| ||  ||||||||||| |  ||| |||||  ||| ||| ||||||    
T  5163792 caaaattattatttttacttagtagttagtactatataaatatatatctttttaattcggtttgattaattatattgagaatattattttagaaaacttt 5163891  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaa 195  Q
     ||||| ||||||||||||||||||||||||| | ||||||||    
T  5163892 gattataaatgaatcttttgtaacaaaaaatgtaagaagaaaa 5163934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 36186700 - 36186579
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||||| ||||||| || |||||||||||| |  ||||||||| |||| |||||||||| ||||| ||| ||||||||| ||||||||||| | ||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaag 36186601  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    ||||||||| ||||||||||||    
T  36186600 aaaaacattagaataattaaaa 36186579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 30257940 - 30257776
Alignment:
Q  23 caacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaa-atagatatatttatttttaactccctttgattaa 121  Q
    ||||||||||||||||| | | || || | |||||||||| |||||||||| |||||| || ||| |||||||||||| |||| || ||  |||||||||    
T  30257940 caacccagggcaccattattttaaaggcatcaaaattattttttttacttaatagttaatactaatatagatatatttcttttcaattcggtttgattaa 30257841  T
Q  122 ttcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgca 186  Q
    || |  ||||||||| |||| |||||||||| ||||| ||| ||||||||| |||||||||||||    
T  30257840 ttatattgaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgca 30257776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 40877056 - 40876936
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||   || ||||||||||  ||||||||| |||| | |||||     
T  40877056 accaaaattattatttttacttggtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaatatatttttatagaacc 40876957  T
Q  151 tttattatcaatgaatctttt 171  Q
    || ||||| | ||||||||||    
T  40876956 ttgattatgagtgaatctttt 40876936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 15925443 - 15925661
Alignment:
Q  19 acggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagta--gttagtattaaatagatatatttatttttaactccctttg 116  Q
    |||||||||||  |||||||||| ||| ||| | |||||||||||||||||||| |||  || ||||||  |||||||||||| |||||||||| ||||     
T  15925443 acggcaacccaaagcaccattttttaaggggtatcaaaattattatttttactttgtattgtaagtattgtatagatatatttctttttaactcgcttta 15925542  T
Q  117 attaattcttatg---aaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||| |  ||   ||||||| |||  ||| |||||| || ||  ||||||||||||||||||||||| ||  | |||| || ||| |||||||||||    
T  15925543 attaattatattgaaaaaaatatatttctagaaaactttaataat-gatgaatcttttgtaacaaaaaatacaaaaggaaagacgttcaaataattaaaa 15925641  T
Q  214 tagtacaactttattgattcg 234  Q
     || ||||||| |||||||||    
T  15925642 -agcacaacttcattgattcg 15925661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 36507000 - 36506809
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttt 153  Q
    ||||| |||||||||| |||||||||||||||| ||||| |||||| |||||||||| |||||||| |||||  |||||||| ||||| ||| |||        
T  36507000 aaaatcattatttttaattagtagttagtattatatagaaatatttgtttttaactctctttgattgattctattgaaaatacgtttttagaaaac---- 36506905  T
Q  154 attatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaat 251  Q
      ||| || |||||||||  |||  |||||||| ||| ||| ||||| |||| |||||||  ||||| ||||||||||||| ||| | ||| ||||||    
T  36506904 -ctatgaacgaatcttttccaac-gaaaatgcaagaaaaaagacatttgaatgattaaaaacgtacatctttattgattcgtctagggcaccaaaaat 36506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 16647055 - 16646928
Alignment:
Q  86 aaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgc 185  Q
    |||||||||||||| ||||||| |   |||||||||||||  ||||||||| |||| |||||| ||| ||||| |||||||||| || ||||||||||      
T  16647055 aaatagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataa 16646956  T
Q  186 acgaagaaaaacattcgaataattaaaa 213  Q
    | ||||||||| |||  |||||||||||    
T  16646955 aagaagaaaaatattaaaataattaaaa 16646928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 38561844 - 38562002
Alignment:
Q  55 aaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaactttta 154  Q
    ||||||||||||||| |||||||||| ||  | ||||||| |||| ||||||| |   |||||||||||| | ||||||||| |||| |||||||||| |    
T  38561844 aaattattatttttatttagtagttattacaatatagatacatttctttttaatttgttttgattaattcat-tgaaaatatttttttagagaactttca 38561942  T
Q  155 ttatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaat 214  Q
    |||| ||||||| || || |||||||||| ||  |||||||| ||| ||| | |||||||    
T  38561943 ttataaatgaatattgtgcaacaaaaaatacaaaaagaaaaatattagaacagttaaaat 38562002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 28556734 - 28556603
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||  ||| || ||  ||||||||||| |  | ||||||| |||| | ||||||||    
T  28556734 caaaattattatttttacttagtagttagtactatatagatacatttcgtttaaattcggtttgattaattatattaaaaatatatttttaaagaacttt 28556635  T
Q  153 tattatcaatgaatcttttgtaacaaaaaatg 184  Q
     || || || |||||||| | || ||||||||    
T  28556634 gatgataaacgaatctttggaaataaaaaatg 28556603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 38134084 - 38134230
Alignment:
Q  64 tttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatg 163  Q
    |||||||||||||||||||| || ||| ||||  || ||||||||||  ||||||||||| |  | ||||||| ||||| |||||| ||  |||  ||||    
T  38134084 tttttacttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatatttttta-gagaaccttatttacgaatg 38134180  T
Q  164 aatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||||| ||||||||||| | ||| ||| ||||| |||||| |||||    
T  38134181 aatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataactaaaa 38134230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 2887111 - 2886978
Alignment:
Q  96 atttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaa 195  Q
    |||| ||||||| ||  |||||||||||||  | |||| || |||| |||||||||| ||||| ||| |||| | |  ||||||||||||| ||||||||    
T  2887111 atttttttttaattcgttttgattaattctattaaaaaaatatttttagagaactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaa 2887012  T
Q  196 acattcgaataattaaaatagtacaactttattg 229  Q
      ||| ||||||||||||  |||||| |||||||    
T  2887011 gtattagaataattaaaaaggtacaattttattg 2886978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 17271424 - 17271273
Alignment:
Q  21 ggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagttagtattaaatagatatattta---tttttaactccctttga 117  Q
    |||| |||||||| | ||||| | | ||| |||||||||||||||||||||||||||| ||||| | |||||||||| ||   ||||| | |   |||||    
T  17271424 ggcagcccagggcgctatttttttaggggtaccaaaattattatttttacttagtagtcagtataatatagatatatatatattttttcatttgttttga 17271325  T
Q  118 ttaattcttatgaaaatatgttttaagagaacttttattatcaatgaatctt 169  Q
    |||||| |  ||||||||| |||| ||  |||||| ||||| ||||||||||    
T  17271324 ttaattatattgaaaatatatttttagcaaactttgattataaatgaatctt 17271273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 18197338 - 18197520
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttt 152  Q
    ||||||||||||||||||||  ||||||||||| | || |||||||| ||||||||||  |||| |||| |||  ||||||||| ||||     || | |    
T  18197338 caaaattattatttttacttgatagttagtatt-attacatatatttctttttaactcgttttggttaagtctactgaaaatatttttttcacaaaatct 18197436  T
Q  153 tat-tatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagt-acaactttattgattcgcc 236  Q
    ||| ||| ||||||| ||||||||| ||||||| | ||||||| ||||| ||| |||||||| ||| ||||||||||| |||||||    
T  18197437 tatctattaatgaatgttttgtaac-aaaaatgtaagaagaaacacatttgaaaaattaaaa-agtcacaactttattaattcgcc 18197520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 18830100 - 18829973
Alignment:
Q  56 aattattatttttacttagtagttagtattaaatagatatattt-atttttaactccctttgattaattcttatgaaaatatgttttaagagaactttta 154  Q
    |||||||||||||||||||| | ||||| || ||||||||||||  ||||||||   || ||||||||| |  ||||||||| |||| |||||||  | |    
T  18830100 aattattatttttacttagtgggtagtactatatagatatatttcttttttaacatgctatgattaattttattgaaaatatatttttagagaacaatga 18830001  T
Q  155 ttatcaatgaatcttttgtaacaaaaaa 182  Q
    |||| ||||||| ||||| || ||||||    
T  18830000 ttatgaatgaattttttgcaaaaaaaaa 18829973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 38608400 - 38608294
Alignment:
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatag-tacaacttta 226  Q
    ||||||||| |||| | ||||| || ||||| ||| |||| |||| |||||||||| || ||| ||| ||||| |||||||||||| || ||||| ||||    
T  38608400 tgaaaatatatttttaaagaaccttaattatgaatcaatcatttgcaacaaaaaatacaggaataaacacatttgaataattaaaagagatacaatttta 38608301  T
Q  227 ttgattc 233  Q
    |||||||    
T  38608300 ttgattc 38608294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 37912332 - 37912453
Alignment:
Q  92 atatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaag 191  Q
    |||||| | ||||||| || |||||||| |||||  ||||||||| ||||  |  |||||| ||||| ||||||| ||||| |||||| |||| | | ||    
T  37912332 atatatatctttttaattcgctttgatttattctcttgaaaatatatttttgggtaactttgattataaatgaatattttgcaacaaacaatgtaaggag 37912431  T
Q  192 aaaaacattcgaataattaaaa 213  Q
    ||||| ||| ||||||||||||    
T  37912432 aaaaatatttgaataattaaaa 37912453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 28226877 - 28226833
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatat 95  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  28226877 accaaaattattatttttatttagtagttaatattatatagatat 28226833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 38035445 - 38035390
Alignment:
Q  54 aaaattattatttttacttagtagttagtattaaatagatatatttatttttaact 109  Q
    |||||||||||||||||| | |||||||||||||||  |||||||| |||| ||||    
T  38035445 aaaattattatttttactcattagttagtattaaattaatatatttcttttaaact 38035390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 4206693 - 4206647
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatat 97  Q
    |||||||||||||| |||||||||||||||||| || ||| ||||||    
T  4206693 accaaaattattatatttacttagtagttagtaatatatatatatat 4206647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 6621319 - 6621389
Alignment:
Q  53 caaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaatt 123  Q
    ||||||||||||||| | || ||||||| ||  | ||  |||||||| |||||||||||||||||||||||    
T  6621319 caaaattattattttcatttggtagttaatagcatatgcatatatttctttttaactccctttgattaatt 6621389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 16647996 - 16647942
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttag 74  Q
    |||||||||||||||||||||| | | ||| | ||||||||||||||||| ||||    
T  16647996 cggcaacccagggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 34345892 - 34345926
Alignment:
Q  47 gggaaccaaaattattatttttacttagtagttag 81  Q
    ||||| |||||||||||||||||||||||||||||    
T  34345892 gggaatcaaaattattatttttacttagtagttag 34345926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 35281055 - 35280919
Alignment:
Q  60 attatttttacttagtagttagtattaaatagat--atatt-tatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttatt 156  Q
    |||||||||||||| |||||||||||  ||||||  ||||| | |||||||||   |||||||||||||  ||||||||| |||| | | || | | |||    
T  35281055 attatttttacttaatagttagtattgtatagatacatattatttttttaacttgatttgattaattctattgaaaatatatttttaaataattatcatt 35280956  T
Q  157 atcaatgaatcttttgtaacaaaaaatgcacgaagaaa 194  Q
    || |||||||||||| | | |||||||||| |||||||    
T  35280955 atgaatgaatctttt-tcataaaaaatgcaagaagaaa 35280919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 40705935 - 40705853
Alignment:
Q  168 ttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaatagtacaactttattgattcgcctaagacactaaaaa 250  Q
    |||||||| |||||||||| ||||||| |||||| |||||||||||  |  || ||||||||||||  ||| ||||| |||||    
T  40705935 ttttgtaataaaaaatgcaagaagaaagacattcaaataattaaaagggcgcatctttattgattcatctaggacacaaaaaa 40705853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 26350528 - 26350440
Alignment:
Q  94 atatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaat 183  Q
    ||||||||||| ||||| |||||||||||| |  ||||||||| |||||| | ||||||  |||| ||||||| ||||| | ||||||||    
T  26350528 atatttattttaaactcgctttgattaattttattgaaaatattttttaa-aaaactttatttatgaatgaattttttgcagcaaaaaat 26350440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 4206409 - 4206325
Alignment:
Q  112 ctttgattaattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaa 196  Q
    ||||||||||||||  | |||| ||  ||| ||| |||||| ||||| ||||||| ||||| ||||||||||||| ||| |||||    
T  4206409 ctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaacaaaaaatgcaagaaaaaaaa 4206325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 37911399 - 37911459
Alignment:
Q  20 cggcaacccagggcaccattttataaagggaaccaaaattattatttttacttagtagtta 80  Q
    ||||| |||||| ||||||||  | | ||| |||||||||||||||||| |||||||||||    
T  37911399 cggcagcccaggacaccatttatttaggggcaccaaaattattatttttgcttagtagtta 37911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 9699 - 9813
Alignment:
Q  51 accaaaattattatttttacttagtagttagtattaaatagatatatttatttttaactccctttgattaattcttatgaaaatatgttttaagagaact 150  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||| | ||||||| ||  ||||||||||| |  ||| ||||| |||| ||| ||||    
T  9699 accaaaattattatttttatttagtagttagtactatatagatatatatctttttaattcggtttgattaattatattgagaatatatttttagaaaact 9798  T
Q  151 tttattatcaatgaa 165  Q
    || ||||| ||||||    
T  9799 ttgattataaatgaa 9813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 1720 - 1805
Alignment:
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||||| |||| |||||||||| ||||| ||| ||||||||| || |||||||| | ||||||||| |||  |||||||||||    
T  1720 tgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 1805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 9783 - 9868
Alignment:
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaaa 213  Q
    ||||||||| |||| |||||||||| ||||| ||| ||||||||| || |||||||| | ||||||||| |||  |||||||||||    
T  9783 tgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 9868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 403 - 487
Alignment:
Q  128 tgaaaatatgttttaagagaacttttattatcaatgaatcttttgtaacaaaaaatgcacgaagaaaaacattcgaataattaaa 212  Q
    |||||| || |||| ||| |||||| ||||| ||| ||| ||||  || |||||||||| ||||||||| ||| |||||||||||    
T  403 tgaaaaaatatttttagataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaaa 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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